Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0915
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23390.1 68417.m03372 expressed protein contains Pfam profi... 29 2.6
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 29 2.6
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 29 2.6
At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.5
At3g11900.1 68416.m01459 amino acid transporter family protein l... 28 6.0
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 28 6.0
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i... 28 6.0
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 28 6.0
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 28 6.0
At1g53040.2 68414.m06006 expressed protein contains Pfam profile... 28 6.0
At1g53040.1 68414.m06005 expressed protein contains Pfam profile... 28 6.0
At1g28240.1 68414.m03466 expressed protein 28 8.0
>At4g23390.1 68417.m03372 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 401
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 210 IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 323
IV+ + ++ + + W +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 477 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 364
+R SSS P+ +G PS+K +V NI P CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -2
Query: 549 LNTEVSPPQ---FCPWFSCQE*SG*A---TIRPSSSTVPNVTGRPSSKR 421
L ++PP CP SC+ S A T PS++T P V GRPS +R
Sbjct: 257 LYMHMTPPTTLTMCP--SCERVSSSAATVTAAPSTTTTPTVVGRPSPQR 303
>At1g10400.1 68414.m01172 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 365
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 621 GQYCVSPILPASIIQRRLHSSIATLNTEVSPPQFCPWFSCQE 496
G C S ++ S+ Q +L S++ + VS P+F PW ++
Sbjct: 43 GMNCASTVICDSVFQNQLLSNVKSETEPVSVPEF-PWIKVRK 83
>At3g11900.1 68416.m01459 amino acid transporter family protein low
similarity to proton/amino acid transporter 1 [Mus
musculus] GI:21908024; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 432
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 651 QIDLCIGMSSTYQVTLHPL 707
QI LC+G++ T+ + +HPL
Sbjct: 298 QIGLCVGLTFTFPIMVHPL 316
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 357 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 235
T+ P + + + YD AS F T SSSA T +R F PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209
>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 302
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 527 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 375
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 527 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 375
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 527 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 375
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 24 IRTPVSIINIFICTYINSINSFTSLSTL 107
IR + I N+F C + N ++ FTS L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448
>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 24 IRTPVSIINIFICTYINSINSFTSLSTL 107
IR + I N+F C + N ++ FTS L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 24 IRTPVSIINIFICTYINSINSFTSLSTLR*GTV 122
+R V I N+F C + N ++ FTS + TV
Sbjct: 447 LREHVPISNLFTCLWFNEVDRFTSRDQISFSTV 479
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,588,118
Number of Sequences: 28952
Number of extensions: 394855
Number of successful extensions: 965
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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