Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0914
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    30   0.35 
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   2.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   4.3  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.6  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    25   9.9  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   9.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.9  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -2

Query: 584 SVTALSLKNLTKIFL*SNKVGKYYLDQFSVYKNAN*VAMFTLELPLYFHCHLRIRLQDRQ 405
           S+  L  K++  +    NKV      QFSV KN   + MF   LP Y+H H+ I   D +
Sbjct: 196 SIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 158 SPQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPDTVP 322
           S Q D ++ +   Q   +   HRR+D          RS  YRS R H+++ DT P
Sbjct: 305 SQQEDYDKPKNT-QVSRSSNHHRRYDS----YHPDSRSDSYRSKREHYDNRDTGP 354


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 255 LHNIDRINTE--VHGVIMNIPIPFPLPE 332
           LH + ++N +  VHGV++ +P+P  L E
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNE 138


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 259 CSGVNCRPIVASVFLFSIQ 203
           CSGVNC  ++  VF F+ +
Sbjct: 833 CSGVNCHDLIYHVFSFAAE 851


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 708 IIPQDKWVTDKKVSEINKTILP 643
           +IP+D+ +++++  E+ K ILP
Sbjct: 203 VIPEDEMLSEEEEQEVEKQILP 224


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
 Frame = +2

Query: 143 VQTSDSPQRDGERMRRVVQSLYTE-EKHRRHDRPAVYTTAQHRSH--------KYRSSRG 295
           ++ +  P+   +R+  V  S + + +    H  P V +    ++H        +YRSS  
Sbjct: 35  LKITSPPRNPPQRLHPVDFSEHADTDDDMNHPLPRVQSPVHIKNHIDPKLAEDRYRSSAA 94

Query: 296 HHEHPDTVPPAGV 334
            H  P ++PP+ +
Sbjct: 95  RHFEPISIPPSAI 107


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 162 HNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPFPLPESDA 341
           H+  V    +S S+    ++    +GL F+P +      +  HG + +     PLP S +
Sbjct: 34  HHNLVDAFMQSPSYSTQPKSAVEPLGLSFSPGYISPSSQSPHHGPVRSPSSRKPLPASPS 93

Query: 342 -CKDNGLTCPL 371
             +D+ L  P+
Sbjct: 94  RTRDHSLRVPV 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,465
Number of Sequences: 5004
Number of extensions: 63319
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)