Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0914
         (825 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48550.1 68416.m05301 expressed protein putative zinc-finger ...    31   0.70 
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ...    31   1.2  
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ...    31   1.2  
At2g42140.1 68415.m05216 VQ motif-containing protein contains PF...    31   1.2  
At2g38660.1 68415.m04748 tetrahydrofolate dehydrogenase/cyclohyd...    31   1.2  
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family...    29   2.8  
At5g47430.1 68418.m05844 expressed protein                             29   3.7  
At4g33120.1 68417.m04718 coclaurine N-methyltransferase, putativ...    29   3.7  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    29   3.7  
At1g04530.1 68414.m00445 expressed protein                             29   3.7  
At1g22800.1 68414.m02848 expressed protein similar to Biotin syn...    29   5.0  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    28   6.5  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    28   6.5  
At3g45210.1 68416.m04879 expressed protein contains Pfam profile...    28   8.7  
At2g46710.1 68415.m05828 rac GTPase activating protein, putative...    28   8.7  

>At3g48550.1 68416.m05301 expressed protein putative zinc-finger
           protein - Arabidopsis thaliana,PID:g4406777
          Length = 158

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 164 QRDGERMRRVVQSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHE 304
           Q+D  +  +++ S  + E   R  RP V TT  H +H   SS  HH+
Sbjct: 4   QQDHHKELQLLPSPPSTESPVRKHRPTVITTDHHNNHHRSSSMIHHD 50


>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 405

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 197 QSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHEH 307
           QS   +EK++ ++ P +YT A   +  YRSS+ H +H
Sbjct: 51  QSALAQEKNKSNEAPMLYTCA-ICAKGYRSSKAHEQH 86


>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 404

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 197 QSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHEH 307
           QS   +EK++ ++ P +YT A   +  YRSS+ H +H
Sbjct: 51  QSALAQEKNKSNEAPMLYTCA-ICAKGYRSSKAHEQH 86


>At2g42140.1 68415.m05216 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 172

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 170 DGERMRRVVQSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPD 313
           D    R +VQ+L  ++ H  HD P  +     R+ + R S  HHE  D
Sbjct: 47  DVANFREIVQNLTGKQDHHHHDLP--HQKGLKRNPRSRRSHDHHEVHD 92


>At2g38660.1 68415.m04748 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
           precursor (C1-THF synthase) [Includes:
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
           Formyltetrahydrofolate synthetase (EC 6.3.4.3)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           NAD(P)-binding domain, PF00763: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, catalytic domain
          Length = 352

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 174 VSGCEESSSHCILKR-NTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPFPLPES 335
           +  CEE+    +L     D T G   + L   +  +T +HG+++ +P+P  L ES
Sbjct: 115 IKACEETGIKSVLAELPEDCTEGQIISVLRKFNE-DTSIHGILVQLPLPQHLNES 168


>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 135

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 242 AVYTTAQHRSHKYRSSRGHHEHPDTVPP 325
           A++    HR  K+R  R HH+HP   PP
Sbjct: 64  AIHEKHHHRRKKWRQRR-HHKHPPPPPP 90


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 164 QRDGERMRRVVQSLYTEEKHRRHDRPAVYTTAQHRSHKYRSSRG-HHEHPDTVPPAGV*R 340
           QRD ER R   Q +   E  R  DR     +  HR H+  + R  HH    + PP+    
Sbjct: 704 QRDRERSRH--QDV-DREHDRTRDRRDEDRSRDHRHHRGETERSQHHHRKRSEPPSSEPP 760

Query: 341 VQGQRADL 364
           V   +A++
Sbjct: 761 VPATKAEI 768


>At4g33120.1 68417.m04718 coclaurine N-methyltransferase, putative
           similar to coclaurine N-methyltransferase [Coptis
           japonica] GI:16754879
          Length = 355

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -2

Query: 458 ELPLYFHCHLRIRLQDRQCCFIIRQGSLLEGAGQPVV---LARVRLRQGERYRDVHDDPV 288
           ELP  F  H   R     CC+     S LE AG+ ++     R ++  G+   D+     
Sbjct: 82  ELPTAFFEHALGRNIKYSCCYYSNDSSSLEEAGEAMLALSCERAKVEDGQSVLDIGCGWG 141

Query: 287 NFCIYAIDVVQWCKLQADRGVCVS 216
           +  +Y       CKL    G+C S
Sbjct: 142 SLTLYIARKYSKCKL---TGICNS 162


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 206 YTEEKHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPDT 316
           + EE H  H       +  H+SH +++   HH+H D+
Sbjct: 541 FHEEHHHAHGGSGCTHSHSHQSHSHKNEE-HHQHSDS 576


>At1g04530.1 68414.m00445 expressed protein
          Length = 310

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 688 PLILRNYTSFTECVGDLTGS 747
           PL+L+NY  F E  GDL+G+
Sbjct: 136 PLLLKNYAKFLEYKGDLSGA 155


>At1g22800.1 68414.m02848 expressed protein similar to Biotin
           synthesis protein bioC. {Serratia marcescens}
           (SP:P36571); ESTs gb|Z34075, gb|Z34835 and gb|AA404888
           come from this gene
          Length = 355

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +3

Query: 57  LILSTKMLFFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATI 236
           L+   K+L   TA    A  ++ F  + G+  AT   + ++G  E SSH   KR   AT+
Sbjct: 283 LLERNKILNRETAVATAAIYDSMFATEDGTIPATFQVIYMTGWREHSSHPQAKRRGSATV 342

Query: 237 GLQFTPL 257
              FT L
Sbjct: 343 --SFTDL 347


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 218 KHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPDTV 319
           + R+H++    +  +H  H++RSSR  HE    V
Sbjct: 740 RSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDV 773


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 218 KHRRHDRPAVYTTAQHRSHKYRSSRGHHEHPDTV 319
           + R+H++    +  +H  H++RSSR  HE    V
Sbjct: 740 RSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDV 773


>At3g45210.1 68416.m04879 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 148

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 187 SHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNN 77
           S P TVT  TVAS  P +++N +  L K     ++N+
Sbjct: 60  SSPATVTTTTVASSLPMNVQNWSKILGKENRKSIEND 96


>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 2 [Lotus
           japonicus] GI:3695061; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 455

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 358 SPLSLHASDSGRGNGIGMFMMTP*TSVFMRSML 260
           +PLS HAS SG G+G G   +    +  +R  L
Sbjct: 54  TPLSSHASRSGNGSGSGQLTVVDLLAAVLRKSL 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,945
Number of Sequences: 28952
Number of extensions: 340778
Number of successful extensions: 931
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)