Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0911
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   217   5e-57
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    32   0.37 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           31   1.1  
At3g19190.1 68416.m02436 expressed protein                             29   2.6  
At1g33230.1 68414.m04106 expressed protein                             29   3.4  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    28   7.9  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    28   7.9  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  217 bits (531), Expect = 5e-57
 Identities = 106/203 (52%), Positives = 150/203 (73%), Gaps = 2/203 (0%)
 Frame = +1

Query: 85  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 261
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 262 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDT 438
           ++MK ++F+L E K+  GD    VVL+NV +A +K+RS+ +N+AGV LP F+ + +G   
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 439 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 618
            +L GLARGGQQ+   +  +  A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ P
Sbjct: 121 NDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 619 RLERTLAYIISELDELEREEFYR 687
           +LE T++YI  ELDELERE+F+R
Sbjct: 181 KLENTISYIKGELDELEREDFFR 203


>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +1

Query: 115 PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 294
           PS+G      G + G + G GLL   A  +    R    +  + + L+G  +K   F+ +
Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685

Query: 295 EAKFTTGDFN 324
           E K  T DF+
Sbjct: 686 ELKSATQDFD 695


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +1

Query: 304 FTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAK 483
           F   D   +  Q   + Q     ++ +VAG  +P++ES    S+ +   G + GG+ L  
Sbjct: 46  FDRSDSPNLTTQQKQEHQRVEMDEESSVAGGRIPVYESAGMLSEMFNFPGSSGGGRDL-D 104

Query: 484 LKKNFQSAVKLLVE 525
           L ++F+S  +LL E
Sbjct: 105 LGQSFRSNRQLLEE 118


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 545 EVCSEANSTKSFTALWKFFFSFASCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 378
           EV  + ++ + F  LWK F SF S C P    ++     P+   + +    PATLS
Sbjct: 309 EVRFQPSTIRWFLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363


>At1g33230.1 68414.m04106 expressed protein
          Length = 347

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -1

Query: 594 VDTSIRDLNNLVESDK*SLQ*S*LDQKLYSALEVLLQLCKLLPTTGQTSQLV 439
           VD+SIR L++ + SDK       LD KL+  LE  LQ  + +   G TS  +
Sbjct: 43  VDSSIRRLHSTLASDK------HLDPKLFEKLEEDLQRARCMLADGDTSSFL 88


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 433 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 609
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 610 IIPRLERTLAYIIS 651
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 433 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 609
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 610 IIPRLERTLAYIIS 651
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,869
Number of Sequences: 28952
Number of extensions: 314552
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)