Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0910
         (745 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P57413 Cluster: Ribosomal RNA small subunit methyltrans...    36   0.80 

>UniRef50_P57413 Cluster: Ribosomal RNA small subunit
           methyltransferase C (EC 2.1.1.52) (rRNA
           (guanine-N(2)-)-methyltransferase); n=3; Buchnera
           aphidicola|Rep: Ribosomal RNA small subunit
           methyltransferase C (EC 2.1.1.52) (rRNA
           (guanine-N(2)-)-methyltransferase) - Buchnera aphidicola
           subsp. Acyrthosiphon pisum (Acyrthosiphon pisumsymbiotic
           bacterium)
          Length = 338

 Score = 36.3 bits (80), Expect = 0.80
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = -1

Query: 268 NNIKGFKFTKYSLDRNRFNGAVIFLNLHTNL 176
           NN+   K ++Y+L+ N+FNG +++ NL++N+
Sbjct: 229 NNMYALKCSQYTLNSNKFNGKIVYSNLYSNV 259


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,000,987
Number of Sequences: 1657284
Number of extensions: 12548667
Number of successful extensions: 26002
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 25217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25994
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)