Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0910
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   6.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   6.5  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   6.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   6.5  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 157 DYLEDKYQLLEISGLKLN 104
           DY E  YQ LEISGL L+
Sbjct: 774 DYFECFYQSLEISGLNLS 791


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 277  II*LSPHTCVRFRQVEWGLINH 342
            +I LS H C+     EW LI H
Sbjct: 1764 VIELSNHLCLTASSTEWSLIKH 1785


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 250 KFTKYSLDRNRFNGAVIFLNLHTNLLFIF 164
           ++T  + D ++  GA++FL LHT +  I+
Sbjct: 325 RYTSITNDTSQDIGAIVFLLLHTGIPIIY 353


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 602 TSFSPTYAESSVFLPLYREESVTFPPWVLTS 694
           +S + +Y  + V  PLY  ++VT P W  TS
Sbjct: 100 SSSATSYPATFVSTPLYTMDNVTAPVWSNTS 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,132
Number of Sequences: 5004
Number of extensions: 58890
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)