Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0910
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13665| Best HMM Match : Collagen (HMM E-Value=0.55)                 32   0.56 
SB_57520| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   9.2  

>SB_13665| Best HMM Match : Collagen (HMM E-Value=0.55)
          Length = 515

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 220 RFNGAVIFLNLHTNLLFIFKTDY-LEDKYQ--LLEISGLKLN 104
           RF G + +L LH+ L  +F  DY L D +Q     ISGL  N
Sbjct: 51  RFLGGIAYLGLHSGLAVVFSNDYLLSDNFQEGSCIISGLGYN 92


>SB_57520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 260 KRLQVYKIFIGPQQIQRCSDISQSSH*PF-IYFQDRLFRRQISITR-DIWSKVKQ 102
           K   +  + I P+  QR  DI+ S+     ++ QD+L+R Q S+ + D+  K  Q
Sbjct: 55  KASSIENVHITPEDRQRADDINNSTKDKISLFIQDKLYRLQDSVVKEDLVQKCNQ 109


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 178 LLFIFKTDYLEDKYQLLEISGLKLNNLPKSRLI 80
           +LF++    +ED  +++E  G++ + LP  RLI
Sbjct: 302 VLFVYVNTEVEDNQRIVEFFGIQSSELPTIRLI 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,425,627
Number of Sequences: 59808
Number of extensions: 401992
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)