Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0910
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p...    28   7.5  
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    28   7.5  
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99...    27   9.9  
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99...    27   9.9  
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99...    27   9.9  
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99...    27   9.9  

>At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger)
           family protein (ATL5) identical to RING-H2 zinc finger
           protein ATL5 [Arabidopsis thaliana]
           gi|4928401|gb|AAD33583
          Length = 257

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 325 WGLINHREQKNILS*LKLKLTKGYVLMV-ILLIACCHSYS 441
           WG +NH   +  L+  K+ L    +L V ++LI C HSY+
Sbjct: 12  WGNMNHGSSRYSLNG-KIMLASVIILFVAVILILCFHSYA 50


>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 224

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 652 VQREENRTFGVGRRKRSITCVRPYK 578
           ++R +N TFG GRRK S+   + ++
Sbjct: 26  IRRTDNTTFGYGRRKLSVEWAKDFQ 50


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 652 VQREENRTFGVGRRKRSITCVRPYK 578
           ++R +N TFG GRRK S+   + ++
Sbjct: 52  IRRTDNTTFGYGRRKLSVEWAKDFQ 76


>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 560 NWHKVDFVWTNTSNTSFSPTYAESSVFLPLYREESVTFPP 679
           NW +  F  T+ S+ S S +   S    P Y  ES  +PP
Sbjct: 9   NWRQSSFRSTSASSASPSSSSWASQQSYPQYGAESYNYPP 48


>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 560 NWHKVDFVWTNTSNTSFSPTYAESSVFLPLYREESVTFPP 679
           NW +  F  T+ S+ S S +   S    P Y  ES  +PP
Sbjct: 9   NWRQSSFRSTSASSASPSSSSWASQQSYPQYGAESYNYPP 48


>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 560 NWHKVDFVWTNTSNTSFSPTYAESSVFLPLYREESVTFPP 679
           NW +  F  T+ S+ S S +   S    P Y  ES  +PP
Sbjct: 9   NWRQSSFRSTSASSASPSSSSWASQQSYPQYGAESYNYPP 48


>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 560 NWHKVDFVWTNTSNTSFSPTYAESSVFLPLYREESVTFPP 679
           NW +  F  T+ S+ S S +   S    P Y  ES  +PP
Sbjct: 9   NWRQSSFRSTSASSASPSSSSWASQQSYPQYGAESYNYPP 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,684
Number of Sequences: 28952
Number of extensions: 281315
Number of successful extensions: 541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)