Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0909
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 134 CKTFWREPEVSSCVNYFILSM 196
           C   WR P + +  NY++ ++
Sbjct: 55  CIVIWRNPSMQTPTNYYLFNL 75


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 394  IQKYTLEILLC 362
            +QKYTLE LLC
Sbjct: 1419 VQKYTLENLLC 1429


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 178 LFHFVNVVI*CRGGAF*PTVVY 243
           LF+ VN++I C G +F   +V+
Sbjct: 241 LFYTVNLIIPCMGISFLTVLVF 262


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 178 LFHFVNVVI*CRGGAF 225
           LF+ VN++I C G +F
Sbjct: 245 LFYTVNIIIPCMGISF 260


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 178 LFHFVNVVI*CRGGAF 225
           LF+ VN++I C G +F
Sbjct: 245 LFYTVNIIIPCMGISF 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,257
Number of Sequences: 438
Number of extensions: 3608
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)