Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0909
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30070.1 68417.m04277 plant defensin-fusion protein, putative...    29   4.1  
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos...    28   7.2  
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos...    28   7.2  

>At4g30070.1 68417.m04277 plant defensin-fusion protein, putative
           contains a C-terminal plant defensin domain, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be)
          Length = 129

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 129 CGVRLFGGNPRCQVV*IISFCQCSY 203
           C  +  GG+  C  +   SFCQC Y
Sbjct: 103 CAQKYIGGHGFCNTLGTFSFCQCEY 127


>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 560

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 523 HN-IRPYACVSVIGVGKLTLTIKGKLSGYFFKNL 621
           HN +R +AC   +  G +T    G  SGYF + L
Sbjct: 349 HNGVRTFACSETVKFGHVTFFWNGNRSGYFNEKL 382


>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 560

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 523 HN-IRPYACVSVIGVGKLTLTIKGKLSGYFFKNL 621
           HN +R +AC   +  G +T    G  SGYF + L
Sbjct: 349 HNGVRTFACSETVKFGHVTFFWNGNRSGYFNEKL 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,117,718
Number of Sequences: 28952
Number of extensions: 246400
Number of successful extensions: 382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)