Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0908
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713...    28   2.4  
05_01_0253 + 1934043-1934201,1934456-1934536,1935008-1935199,193...    27   5.5  
03_01_0242 - 1873066-1873232,1874127-1874186,1874286-1874359,187...    26   9.5  

>08_02_1328 +
           26170248-26170493,26170702-26170798,26171325-26171342,
           26171566-26171666,26173486-26173562,26173736-26173802,
           26176467-26176577,26176652-26176749,26176834-26176903
          Length = 294

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 132 LSVLTTHGVLTINKIT--TASFLAGLPEPL-FLFTYLIKIPLLFY 257
           L++   H    ++ +T    ++L  LPEP  F+FT+   +PL+F+
Sbjct: 178 LTLFRLHRFFFLDDLTGFEITYLLELPEPFSFIFTWFAALPLIFW 222


>05_01_0253 +
           1934043-1934201,1934456-1934536,1935008-1935199,
           1935313-1935548,1935638-1936220
          Length = 416

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 183 ASFLAGLPEPLFLFTYLIKIPLLFYYGL-CTYIIYLHMYTIQHLKYF*KF 329
           A+  A  P P+      +++P + YYG+ C  + Y  +++++  K   +F
Sbjct: 31  AAAAAVAPPPVVEVEVAVQVPHMVYYGVYCLSVYYTRLFSVRGCKRLTQF 80


>03_01_0242 -
           1873066-1873232,1874127-1874186,1874286-1874359,
           1875098-1875264,1875487-1875581,1875873-1875897,
           1875988-1876083,1876204-1876263,1876388-1876585,
           1877354-1877626
          Length = 404

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 137 CANYTWSANDKQNYHSVIPCRIA 205
           CA Y+W+    + YHSV   RIA
Sbjct: 166 CAQYSWALLYLKGYHSVQSYRIA 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,530,853
Number of Sequences: 37544
Number of extensions: 170392
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)