Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0908
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   2.4  
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_5095| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 948

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +3

Query: 9   THTHTYIFLFTDFTGHGVRRRSAEELRTDATGRTHN*CIRMLSVLTTHGVLTINKITTAS 188
           T THT++F  T  T     R +   LRT      H   +R L+ L  H      ++ T +
Sbjct: 491 TFTHTHVFSGTQDTFTHTHRHTKTRLRTLTYLAAHKTRLRTLTYLAAHK----TRLRTLT 546

Query: 189 FLAGLPEPLFLFTYL 233
           + A     +   TYL
Sbjct: 547 YFAAHKTRVRTLTYL 561


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 137 T*HAYTLIMCSPRSIRPQFFS 75
           T + Y +I+C+P + RP FF+
Sbjct: 440 TEYGYAIILCAPSTDRPSFFA 460



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 137 T*HAYTLIMCSPRSIRPQFFS 75
           T + Y +I+C+P + RP FF+
Sbjct: 472 TQYGYAIILCAPSTDRPSFFA 492


>SB_5095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +3

Query: 141 LTTHGVLTINKITTASFLAGLPEPLFLFTYLIKIPLLFYYGLCTYIIYLHMYTIQ 305
           L +H  + I  + + +F+  + EPL   T++IK PL+ +  +    +  H + I+
Sbjct: 208 LVSHAFVIIEPLVSHAFV--IKEPLVSHTFVIKEPLVSHTFVIKETLVSHTFVIK 260


>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1452

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +3

Query: 60   VRRRSAEELRTDATGRTHN*CIRMLSVLTTHGVLTIN 170
            V   SAEEL  D T   HN  +R  SVL  H  L  N
Sbjct: 1392 VTSASAEELEHDYTDDYHNTVLREESVLKGHFYLRDN 1428


>SB_13149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 210 PLFLFT-YLIKIPLLFYYGLCTYIIY-LHMYTIQHLKYF 320
           P FL   Y  +IP L +   CT I Y LH+     + YF
Sbjct: 31  PYFLHVMYYTRIPYLLHVMYCTRITYLLHVMYYARIPYF 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,943,722
Number of Sequences: 59808
Number of extensions: 231750
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)