Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0908
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52180.1 68418.m06477 expressed protein                             28   2.6  
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored...    27   6.1  
At5g04490.1 68418.m00448 phosphatidate cytidylyltransferase fami...    26   8.0  

>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 213 LFLFTYLIKIPLLFYYGLCTYI 278
           L L    +KI ++F +GLCTYI
Sbjct: 21  LTLVLSFVKISIIFLHGLCTYI 42


>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 503

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 34  YSLILQDMEYVDGVLKNCGRMLRGEHIIN 120
           YS + Q    VDG+  + GR+L G   IN
Sbjct: 92  YSSVAQSFTSVDGIKNHRGRVLGGSSAIN 120


>At5g04490.1 68418.m00448 phosphatidate cytidylyltransferase family
           protein contains Pfam profile: PF01148 phosphatidate
           cytidylyltransferase
          Length = 304

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 213 LFLFTYLIKIPLLFYYGLCTYIIYLHM 293
           +F+F + I I LL+YY   + + YLHM
Sbjct: 233 MFIFGFFISIALLYYY---SSLGYLHM 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,969,827
Number of Sequences: 28952
Number of extensions: 145656
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)