Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0907
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...   167   7e-44
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...   150   1e-38
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...   150   1e-38
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   6.3  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score =  167 bits (407), Expect = 7e-44
 Identities = 81/112 (72%), Positives = 93/112 (83%)
 Frame = +2

Query: 41  DNRAVQKLRREVEKAKRALSSSHQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRSTLK 220
           D +A+QKLRREVEKAKR LSS H+  + IE+     DFSETLTRAKFEELN D F  TLK
Sbjct: 83  DKKALQKLRREVEKAKRDLSSVHKTTLTIENLLADYDFSETLTRAKFEELNNDQFLKTLK 142

Query: 221 PVQKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNGKEPSRGINPDE 376
           PV+KVLEDADM K  +DEIVLVGGSTRIPK+QQL+K+FF+GKE +RGINPDE
Sbjct: 143 PVKKVLEDADMTKDQIDEIVLVGGSTRIPKIQQLIKDFFDGKELNRGINPDE 194


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score =  150 bits (363), Expect = 1e-38
 Identities = 69/110 (62%), Positives = 88/110 (80%)
 Frame = +2

Query: 47  RAVQKLRREVEKAKRALSSSHQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRSTLKPV 226
           RA+++LR + E+AKR LSS+ Q  IEI+S F+G D+S T+TRA+FE++NMD F+  + PV
Sbjct: 86  RALRRLRTQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145

Query: 227 QKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNGKEPSRGINPDE 376
            KVL+DA + K  V EIVLVGGSTRIPKVQQL+ E+FNGKEP R INPDE
Sbjct: 146 DKVLQDAKIGKSAVHEIVLVGGSTRIPKVQQLITEYFNGKEPCRSINPDE 195


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score =  150 bits (363), Expect = 1e-38
 Identities = 69/110 (62%), Positives = 88/110 (80%)
 Frame = +2

Query: 47  RAVQKLRREVEKAKRALSSSHQVKIEIESFFEGDDFSETLTRAKFEELNMDLFRSTLKPV 226
           RA+++LR + E+AKR LSS+ Q  IEI+S F+G D+S T+TRA+FE++NMD F+  + PV
Sbjct: 86  RALRRLRTQCERAKRTLSSATQASIEIDSLFDGIDYSTTITRARFEDINMDYFKKCIDPV 145

Query: 227 QKVLEDADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNGKEPSRGINPDE 376
            KVL+DA + K  V EIVLVGGSTRIPKVQQL+ E+FNGKEP R INPDE
Sbjct: 146 DKVLQDAKIGKSAVHEIVLVGGSTRIPKVQQLITEYFNGKEPCRSINPDE 195


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 511 NEFGHHSTDSFNTHGQRVDI 452
           +E G+H+ +S +  G+ VDI
Sbjct: 41  DEEGYHTPESLHYEGRAVDI 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,431
Number of Sequences: 336
Number of extensions: 3611
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)