Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0907
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.3  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   7.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.6  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 149 HHLQRMIQFRS*PGDW 102
           HH+QR  +F +   DW
Sbjct: 463 HHIQRQDEFNAEDQDW 478


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 49  TVVFSDVLAFLLLVQL 2
           T+ F+  L F+LLVQ+
Sbjct: 81  TITFASFLLFILLVQI 96


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 242 DADMNKKDVDEIVLVGGSTRIPKVQQLVKEFFNGKEPS 355
           D D+ K      VL GG+T  P +   +++      PS
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS 98


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -1

Query: 759 VSCPLFSADTCKI--PLASISNVTSICGIPRG 670
           VSCP+  A TC I      I++    C  P+G
Sbjct: 65  VSCPVLRAYTCPICGACGDIAHTVKYC--PKG 94


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 376 GCRIWCCCAGWCTQ 417
           GC + CC  G+ TQ
Sbjct: 112 GCDLMCCGRGYKTQ 125


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 376 GCRIWCCCAGWCTQ 417
           GC + CC  G+ TQ
Sbjct: 113 GCDLMCCGRGYKTQ 126


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 222 GFKVDLKRSMFNSSNLALVSVSEKSSPSKNDSISIL 115
           GF++D    MF  + L     + ++  SK+D  S++
Sbjct: 219 GFRIDAINHMFEDARLLDEPSANRTDLSKDDYESLV 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,093
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)