Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0906
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 57 3e-09
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 55 9e-09
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 40 3e-04
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 2.0
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 3.6
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 26 4.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 6.2
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.2
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 25 8.2
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 56.8 bits (131), Expect = 3e-09
Identities = 64/259 (24%), Positives = 101/259 (38%), Gaps = 21/259 (8%)
Frame = +1
Query: 7 KLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYD 186
KL +G S RE + Y D + ++L V + + +L + Y+
Sbjct: 110 KLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYE 169
Query: 187 IISL--PPQIRAVDLLHKAAYRRG-LGNSLFISPKRINDISSESLQLFASQNITPSRCAV 357
L P + H A++ LGN L +P ++N I++ S++ + P +
Sbjct: 170 NSELWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTL 229
Query: 358 TVIGDSQERAALIVQNL--KLTSSDASQAEA--STYYGG--ELRKEIGG------DLAHV 501
G QE A I + L L SS EA S Y GG ++K + HV
Sbjct: 230 AYAGIPQEIAKEITKELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAPPVPYQQEFTHV 289
Query: 502 ALAVQGAPAGSPQXXXXXXXXXXXGNGPVTKWGADN----SPLAKAIGNIGPFAAA--GF 663
+A++G P P G G G S L + N P+ F
Sbjct: 290 VIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVETCMAF 349
Query: 664 NVSYSDNGLFGVVLSVPKD 720
N SY+D+GLFG+ +++ D
Sbjct: 350 NHSYTDSGLFGMFVTILDD 368
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 55.2 bits (127), Expect = 9e-09
Identities = 60/242 (24%), Positives = 97/242 (40%), Gaps = 7/242 (2%)
Frame = +1
Query: 4 RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA---PR 174
R+ +G +S RE I T + L +L +V +F P++L + R
Sbjct: 83 RESELLGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTAR 142
Query: 175 LKYDIISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCA 354
++ ++ A+ LH+ A+ RG+GN +++ IS ++ FAS+ S +
Sbjct: 143 IESELFREDILRVAMAKLHEKAFHRGIGNEVYLPASASPSIS--EIKDFASKAYVKSNFS 200
Query: 355 VTVIGDSQERAALIVQNLKLTSSDAS--QAEASTYYGGELRKEIGGDLAHVALAVQGAPA 528
V G ++A+ + D S ++ + GE R G + L APA
Sbjct: 201 VISSGPDVQKASDLCAKYFAVIPDGSPLKSAPTKISSGESRVYSKG-TNYFCLGFP-APA 258
Query: 529 GSPQXXXXXXXXXXXGNGPVTKWGADNSPLAKAIGNIGPFAAAGFN--VSYSDNGLFGVV 702
SP+ G KW N+ LAKA G + A YSD L VV
Sbjct: 259 ASPE---LFVLSSILGGDAAVKWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLLSVV 315
Query: 703 LS 708
+S
Sbjct: 316 IS 317
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 40.3 bits (90), Expect = 3e-04
Identities = 51/245 (20%), Positives = 99/245 (40%), Gaps = 17/245 (6%)
Frame = +1
Query: 22 GAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAP---RLKYDII 192
GA+++A RE Y A ++ + +A+ +L ++++N + R + ++
Sbjct: 92 GAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISASAVERERQVILREQEEVD 151
Query: 193 SLPPQIRAVDLLHKAAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIG 369
+ ++ D LH AY+ LG ++ + I ++ E L + N R ++ G
Sbjct: 152 KMADEV-VFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAG 210
Query: 370 D-SQERAALIVQ--------NLKLTSSDASQAEASTYYGGELR-KEIGGDLAHVALAVQG 519
S E + + + + S A + + G E+R ++ A++A+AV+G
Sbjct: 211 SISHEELVKLAEKYFGHLEPSAEQLSLGAPRGLKPRFVGSEIRARDDDSPTANIAIAVEG 270
Query: 520 APAGSPQXXXXXXXXXXXGNGPVTKWGADN-SPLAKAIGNIGPFAAA--GFNVSYSDNGL 690
P GN + + S I A + F+ SYSD GL
Sbjct: 271 MSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGL 330
Query: 691 FGVVL 705
+G+ L
Sbjct: 331 WGIYL 335
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 46 DREFIYYTLEATQDKLNDALEILNNLVSNQEFRP 147
+RE YY L+ +KL++ + LN + ++ P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 232 KAAYRRGLGNSLFISPKRINDISSESLQ 315
K ++RRGL N + S KR+ D E ++
Sbjct: 1110 KESFRRGLNNRVKFSNKRVRDDYDEEME 1137
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 469 LILHHNK*MLQPEKHLMRSILGFEQSMQPFPE 374
+IL H+K L P + L ++ FE+ +Q +PE
Sbjct: 458 IILSHDK--LDPIRGLRSKLISFERFLQKYPE 487
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 293 SLILFGEMKSELPSPRR*AALWSKSTARIWGGREIISYFRRGALSLS 153
S++ F + E + + AL SK + +WGG++ I+ F LSL+
Sbjct: 842 SILHFANLVGEPATQKSSIALVSKMVS-LWGGKDGIAGFENFTLSLT 887
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 607 NSPLAKAIGNIGPFAAAGFNVSY 675
++PL KAIGNI F+ ++Y
Sbjct: 27 DAPLKKAIGNIKKFSIGSLGLTY 49
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 PRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSL-FISPKRINDISSESL 312
PR KYD++SL A L + + L L ++S I+SESL
Sbjct: 226 PRFKYDLLSLGRGFNATGLFRWSRHPNFLAEQLIWLSFYLFGAIASESL 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.132 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,005
Number of Sequences: 5004
Number of extensions: 55030
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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