Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0906
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    88   5e-18
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    87   1e-17
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...    62   3e-10
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...    62   3e-10
At3g29080.1 68416.m03641 hypothetical protein                          30   1.8  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    28   7.2  

>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
 Frame = +1

Query: 4   RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 183
           R++  IG   SAS  RE + YT++A +  + + +E+L + V N  F  WE+N+   ++K 
Sbjct: 137 REIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKVKV 196

Query: 184 DI--ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAV 357
           +I   +  P    ++ +H A Y   L N L+     I  ++ E L+ F  +N T SR  +
Sbjct: 197 EIGEFATNPMGFLLEAVHSAGYSGALANPLYAPESAITGLTGEVLENFVFENYTASRMVL 256

Query: 358 TVIGDSQERAALIVQNL--KLTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQ 516
              G   E    +V+ L   L +        S Y GG+ R+  GG+  H ALA +
Sbjct: 257 AASGVDHEELLKVVEPLLSDLPNVPRPAEPKSQYVGGDFRQHTGGEATHFALAFE 311


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 4/175 (2%)
 Frame = +1

Query: 4   RKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKY 183
           R++  IG   SAS  RE + YT++A +  + + +E+L + V N  F  WE+N+   ++K 
Sbjct: 141 REIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEELRKMKV 200

Query: 184 DIISLP--PQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAV 357
           +I  L   P    ++ +H A Y   L + L+     ++ ++ E L+ F ++N T +R  +
Sbjct: 201 EIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDRLNGELLEEFMTENFTAARMVL 260

Query: 358 TVIGDSQERAALIVQNL--KLTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQ 516
              G   E    + + L   L +     A  S Y GG+ R+  GG+  H A+A +
Sbjct: 261 AASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDFRQHTGGEATHFAVAFE 315


>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 17/250 (6%)
 Frame = +1

Query: 1   QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 180
           + ++  IG +++A   RE   Y  +     +N AL++L +++ N +F    +N     + 
Sbjct: 160 EEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVIL 219

Query: 181 YDIISLPPQIRAV--DLLHKAAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSRC 351
            ++  +  Q   V  D LH  A++   LG ++    + +  I+ E LQ +   + T SR 
Sbjct: 220 REMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRM 279

Query: 352 AVTVIGD-SQERAALIVQNL--KLTSSDASQA-----EASTYYGGELRKEIGGDL--AHV 501
            +   G    E     V+ L  KL+S   + +     E +++ G E+R  I  DL  A  
Sbjct: 280 VIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSEVRM-IDDDLPLAQF 338

Query: 502 ALAVQGAPAGSPQXXXXXXXXXXXGNGPVTKWGADN--SPLAK--AIGNIGPFAAAGFNV 669
           A+A +GA    P            G+      G  +  S L +  AI  I     A FN 
Sbjct: 339 AVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMA-FNT 397

Query: 670 SYSDNGLFGV 699
           +Y D GLFGV
Sbjct: 398 NYKDTGLFGV 407


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 17/250 (6%)
 Frame = +1

Query: 1   QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 180
           + ++  IG +++A   RE   Y  +     +N AL++L +++ N +F    +N     + 
Sbjct: 160 EEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVIL 219

Query: 181 YDIISLPPQIRAV--DLLHKAAYR-RGLGNSLFISPKRINDISSESLQLFASQNITPSRC 351
            ++  +  Q   V  D LH  A++   LG ++    + +  I+ E LQ +   + T SR 
Sbjct: 220 REMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRM 279

Query: 352 AVTVIGD-SQERAALIVQNL--KLTSSDASQA-----EASTYYGGELRKEIGGDL--AHV 501
            +   G    E     V+ L  KL+S   + +     E +++ G E+R  I  DL  A  
Sbjct: 280 VIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSEVRM-IDDDLPLAQF 338

Query: 502 ALAVQGAPAGSPQXXXXXXXXXXXGNGPVTKWGADN--SPLAK--AIGNIGPFAAAGFNV 669
           A+A +GA    P            G+      G  +  S L +  AI  I     A FN 
Sbjct: 339 AVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMA-FNT 397

Query: 670 SYSDNGLFGV 699
           +Y D GLFGV
Sbjct: 398 NYKDTGLFGV 407


>At3g29080.1 68416.m03641 hypothetical protein
          Length = 445

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/55 (21%), Positives = 24/55 (43%)
 Frame = -2

Query: 230 WSKSTARIWGGREIISYFRRGALSLSSHGLNSWFETKLFRISSASFNLSCVASKV 66
           W +   R WGG E++    RG + + + G+   +E K  ++     N      ++
Sbjct: 38  WERDLFRDWGGAEVVETGMRGMMGVKA-GVTEGWEDKQAKVLEVGVNAEVAGDRI 91


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 510  SKGNMSQIPSNFLP*FSTI 454
            SKG++ Q+P+N  P FSTI
Sbjct: 1041 SKGSLKQLPANMKPKFSTI 1059


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,479
Number of Sequences: 28952
Number of extensions: 311868
Number of successful extensions: 476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)