Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0905
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.53 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   0.92 
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.92 
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    27   2.1  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   2.8  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   2.8  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   3.7  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   3.7  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   4.9  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   4.9  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.5  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   8.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 37   PAASQSLTSAERVEPALAHLGSTGFPLPVAQPPSSWHA-LPPPEYVGQHAPTEVEARRDS 213
            P    ++ S+   EP   H  S     PV+  P++  A +PP   +   AP       D+
Sbjct: 972  PLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADA 1031

Query: 214  PPRVVPS 234
            PP  VPS
Sbjct: 1032 PPIPVPS 1038


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 97  GSTGFPLPVAQPPSSWHA 150
           GS GFP+P + P +S+HA
Sbjct: 312 GSAGFPIPGSVPSTSYHA 329


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 85  LAHLGSTGFPLPVAQPPSS--WHALPPPEYVGQHAPTEV 195
           L  + ST  P P A PP S  W A P    V   +P++V
Sbjct: 53  LIDMNSTVLPTPPASPPGSPYWEAKPVSHTVFLESPSDV 91


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -3

Query: 227 TTLGGESLRASTSVGACCPTYSGGGKACHDEGGCATGSGKPVEPRCASAGSTRSALVSDC 48
           TT+  + L  ST  G+   + + GG  CH +      S   V P CA + S R   V D 
Sbjct: 272 TTVKADGLCISTPTGSTAYSLAAGGSLCHPD-----ISVMIVSPICAHSLSLRPIHVPDS 326

Query: 47  EA 42
            A
Sbjct: 327 MA 328


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 287 LTRGRSPGTALTTGHPPATHPITGHVTG 370
           L + R+PG    T  PP +  ITGH  G
Sbjct: 23  LEKRRTPGKPRATREPPISVVITGHSKG 50


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 332 PPATHPITGHVTGLGLGHFL 391
           PP T P TG   GL   HF+
Sbjct: 413 PPGTDPTTGETQGLVRSHFI 432



 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  PPDFPFRASRLAVADERRARRASAG 89
           P DF  R +RLA  D R+A +A AG
Sbjct: 580 PTDFLARRTRLAFLDARQALQAVAG 604


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +1

Query: 118  PVAQP-PSSWHALPPPEY 168
            P+A+P P++W+ +PPP +
Sbjct: 1132 PIAKPAPANWYPVPPPGF 1149


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55   LTSAERVEPALAHLGSTGFPL 117
            L    +++P+LAHLG  G PL
Sbjct: 964  LAQVVQLQPSLAHLGEIGSPL 984


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 181 APTEVEARRDSPPRVVPSWGNVFCKFAIIHFVPLLF 288
           AP E+ ++       + ++ N FC F I++ +PL F
Sbjct: 283 APVEILSQPTPLNVCLGNFFNAFCSFVIVYELPLFF 318


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 290 LNNKGTK*MMANLQKTLPQEG-TTLGGESLRASTSVGACCPTYSGGGKACH 141
           L ++G    M +L   +  E  TTL  + +  ST  G+   + + GG  CH
Sbjct: 371 LIDRGPNPFMISLDLYVENEYITTLQSDGVCVSTPTGSTAYSVAAGGSLCH 421


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 248 FVSLPSFISFLCYLTRGRSPGTALTTGHPP 337
           F ++ S ISF CY+        AL +G PP
Sbjct: 132 FYTVASIISFSCYIVLKMVHPYALPSGAPP 161


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 10  LFRLTFPFGPAASQSLTSAERVEPALAHLGSTGF 111
           L + T    P A  +L      EPA   +GS+GF
Sbjct: 93  LLKSTLSSTPTAGSNLLGTSPAEPASGLVGSSGF 126


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 100 STGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPR 222
           + G+P+    P S+  A PP + V    P+ V +   S  R
Sbjct: 169 NNGYPIGAVNPTSAIPAQPPAQPVNNVLPSYVRSNSRSSAR 209


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 28  PFGPAASQSLTSAERVEPALAHLGS--TGFPLPVAQPPSSWHALP 156
           P    +S SL+SA R    +  +      FP+P   P + W  +P
Sbjct: 2   PLSTQSSDSLSSAGRQSFGVNSVSDFLAQFPIPTNLPSNKWQDIP 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,897
Number of Sequences: 5004
Number of extensions: 50008
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)