Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0904
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0009 - 12132781-12133272                                         28   3.6  
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    27   6.3  
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421...    27   8.4  

>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 317 RSSTWAREQRWSCSKPAPERRRRIGSLR 400
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>01_01_0484 -
           3558941-3559303,3559439-3559560,3560596-3560743,
           3560853-3561491,3562154-3562450,3562553-3563407,
           3564363-3564545,3565041-3565118,3565762-3565974,
           3566075-3566238,3566357-3566445,3566761-3566891,
           3566980-3567148,3567255-3567327,3567525-3567606,
           3567677-3567808,3568743-3568818,3568965-3569065,
           3569446-3569636,3569738-3569912,3570604-3570854,
           3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 482 SLSHQVISTAPLVS*RPPLNLHKLTMNFAKILSFVFALVLALSMTSAAPEPR 327
           +LS  + S  P V+     ++ +L  + A +LS   AL L ++  SA+P PR
Sbjct: 62  ALSSLLASPHPAVAAHAAASVARLAASRADLLSPELALPLLIAPLSASPSPR 113


>03_06_0498 -
           34341441-34341575,34341808-34341945,34342019-34342117,
           34342320-34342400,34342548-34342610,34342717-34342764,
           34343033-34343410,34345413-34345537,34345635-34345701,
           34345797-34345856,34346495-34346621,34346670-34346986
          Length = 545

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 374 ALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVL 243
           A+++A+ M +  P PRW + + ++    ++ D   KA  A+  L
Sbjct: 259 AVIMAIGMWNLPPSPRWLLLRAVQGKA-SVEDNKKKAIQALRSL 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,909,026
Number of Sequences: 37544
Number of extensions: 174325
Number of successful extensions: 397
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)