Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0904
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    28   3.3  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    27   5.7  
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    27   7.6  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    27   7.6  

>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 154 YILKLTSRLNNTSIYGSRFKDHFPIALAEPRTSIAGPALTMP 279
           ++L L+  L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 359 KPAPERRRRIGSLRNSL*VYVNSKADVKTQAA 454
           KPAPE+     SL N L V  N+  ++K Q A
Sbjct: 407 KPAPEQPVNASSLHNELRVISNAICELKAQQA 438


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 318  LQEN*KNGQEHP*RHRQSGPGDRGPRFG*SYRK 220
            L EN KN    P RH+Q+G  D+  + G S  K
Sbjct: 1065 LAENEKNAASPPTRHQQNGSKDKNEKPGCSSTK 1097


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 318  LQEN*KNGQEHP*RHRQSGPGDRGPRFG*SYRK 220
            L EN KN    P RH+Q+G  D+  + G S  K
Sbjct: 1065 LAENEKNAASPPTRHQQNGSKDKNEKPGCSSTK 1097


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,627,668
Number of Sequences: 27780
Number of extensions: 148753
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)