Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0903
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0319 - 8917042-8917122,8917628-8917680,8917754-8917800,891...    31   1.0  
08_02_1328 + 26170248-26170493,26170702-26170798,26171325-261713...    28   9.5  
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    28   9.5  

>02_02_0319 -
           8917042-8917122,8917628-8917680,8917754-8917800,
           8917901-8917992,8919725-8920060,8920370-8920423,
           8920547-8920879,8921133-8921207,8921293-8921441,
           8922411-8922429
          Length = 412

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  LKSVHRNSEMLSVYTWCFTIHKGTHN*GIRMLSVLTRHG 157
           L S+H N   +S Y  CF +H+       RM+ +L RHG
Sbjct: 151 LGSMHANPNCMSPYG-CFPLHEAAERCSPRMIRLLFRHG 188


>08_02_1328 +
           26170248-26170493,26170702-26170798,26171325-26171342,
           26171566-26171666,26173486-26173562,26173736-26173802,
           26176467-26176577,26176652-26176749,26176834-26176903
          Length = 294

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 188 SFLAGLPEPL-FLFTYLIKIPLLFY 259
           ++L  LPEP  F+FT+   +PL+F+
Sbjct: 198 TYLLELPEPFSFIFTWFAALPLIFW 222


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 509 LC*VYFIQKFRSFIYRLRHYEV 444
           +C +YFIQ FRSF++    Y++
Sbjct: 29  VCLIYFIQGFRSFVWTAVSYQM 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,460,596
Number of Sequences: 37544
Number of extensions: 352066
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)