Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0903
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    33   0.28 
At3g19750.1 68416.m02500 hypothetical protein                          31   1.1  
At5g09640.1 68418.m01115 sinapoylglucose:choline sinapoyltransfe...    30   1.5  
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    29   4.5  
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    29   4.5  
At5g52180.1 68418.m06477 expressed protein                             28   7.9  

>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 642 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 740
           +N PN+ +R+ +LA +   NS  Y F+Y  IDF+N
Sbjct: 589 KNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKN 623


>At3g19750.1 68416.m02500 hypothetical protein
          Length = 378

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +2

Query: 500 LNTNKRNPSDGGDTSKEKQNCNFYLIPSIFIVFYFLNLFWTSTNNLRPKLAKSVQPFSNF 679
           ++ NK N  D G T KEK N     + S   +     + W +   L  +  K   PF N 
Sbjct: 96  ISLNKENGVDDGKTGKEKSNNGVGHLDSHAQLGEQDQIEWLNNEKLASECKKKESPFVNR 155

Query: 680 SETNEQQFI 706
            E  + +F+
Sbjct: 156 RERFKNEFL 164


>At5g09640.1 68418.m01115 sinapoylglucose:choline
           sinapoyltransferase (SNG2) GC donor splice site at exon
           11 and 13; TA donor splice site at exon 10; similar to
           serine carboxypeptidase I precursor (SP:P37890) [Oryza
           sativa]; wound-inducible carboxypeptidase, Lycopersicon
           esculentum, EMBL:AF242849; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:choline sinapoyltransferase (SNG2)
           GI:15418806
          Length = 465

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 578 PSIFIVFYFLNLFWTSTNNLRPKLAKSVQPFSNFSETNEQQFIYIF 715
           PS F   YFL+ FW +  N+R  L    +    ++  N Q   Y F
Sbjct: 318 PSCFTYRYFLSAFWANDENVRRALGVK-KEVGKWNRCNSQNIPYTF 362


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 642 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 740
           +N PN+ +   +LA +   N   Y+F+Y  IDF+N
Sbjct: 658 KNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKN 692


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 642 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 740
           +N PN+ +   +LA +   N   Y+F+Y  IDF+N
Sbjct: 658 KNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDFKN 692


>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 215 LFLFTYLIKIPLLFYYGLCTYI 280
           L L    +KI ++F +GLCTYI
Sbjct: 21  LTLVLSFVKISIIFLHGLCTYI 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,378
Number of Sequences: 28952
Number of extensions: 315616
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)