Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0902
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 35 0.013
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 31 0.16
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 27 1.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 1.9
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 27 2.6
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 4.5
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 5.9
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 25 7.9
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.9
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 25 7.9
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 521 PVTEKLRSARLGWYGHVMRRNENEVGKRVLTMNVEGYRG---SGRLKKKWMDCMK 676
P+T L+S LG +G +++NE + K + + +EG R +K W+ C K
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 557 WYGHVMRRNENEVGKRVLTMNVEGYRG-SGRLKKK 658
W HV+R E+ KR + N++ +RG G+LKKK
Sbjct: 60 WKDHVLRDFGLELQKRTILNNIDDWRGLYGKLKKK 94
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 9 LRTGGWYVENGALQIHNSANTAKYRI 86
L T YVE AL+ H+ +T KY I
Sbjct: 15 LYTPNQYVEQAALEAHDGVSTGKYTI 40
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 563 HTILNAHFSTSLSQVPLSDFL*HIIINSVFYSFSLLHTSIATFAYLLH 420
HT+L F V + L +I++ S+ + F+LLH + LLH
Sbjct: 603 HTVLIKPFRDDSKFVDENQSLNNILVASLKFYFNLLHRKVRNGCALLH 650
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 379 GGRAHNPPGVKWLLEPIDIYN 317
GG H+P V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 89 NNPVLGCVSTVVDLKGTVFDIPS 21
N P C+ VVD+KG D PS
Sbjct: 474 NGPQSKCIKCVVDIKGEKKDTPS 496
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 626 LPHS*LTLSYQPHFHFVSSHVHTILNAHFSTSLSQVPLSDFL*HIIINSVFYSFSLLHTS 447
LP S L SYQ FH +H+ + L + + + ++L ++ + YS +LL T+
Sbjct: 809 LPDSYLNSSYQTPFHAGETHLISSLRSKVDLLDRKFLIKEYL---VLQQLKYSINLLITA 865
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 467 FSLLHTSIATFAYLLHAIA*KEDFFYCLVGWTSSQPTWC*VVTGA 333
F + ++++TF+ LH + K + YC++ S + C +V GA
Sbjct: 257 FCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISF-SICVIVDGA 300
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 467 FSLLHTSIATFAYLLHAIA*KEDFFYCLVGWTSSQPTWC*VVTGA 333
F + ++++TF+ LH + K + YC++ S + C +V GA
Sbjct: 257 FCAVLSTLSTFSNELHTMPIKRAYIYCIISVAISF-SICVIVDGA 300
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 488 INSVFYSFSLLHTSIATFAYLLHAIA*KEDFFYC 387
I ++F++++LLH ++ A + I F +C
Sbjct: 263 IENIFFNYALLHQALVQIATQMKNITSDSSFTFC 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,835
Number of Sequences: 5004
Number of extensions: 67069
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -