Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0902
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    31   0.66 
07_03_0081 - 13203140-13203822,13204979-13205045                       29   2.6  
01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213...    29   3.5  
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457...    28   6.1  
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323     28   6.1  

>03_01_0149 -
           1175689-1176258,1176345-1176509,1176631-1177539,
           1178179-1178378,1178505-1178605,1178747-1179369,
           1179451-1179546,1179637-1179798,1179889-1180068,
           1180173-1180323,1180408-1180641,1180753-1180913,
           1181041-1181163,1181261-1181421,1181655-1181877,
           1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 254 PALQTETHNCFTAEIDRVVVPIRADSQEVLPP 159
           PA+ T   + F AEIDR++  I A+S    PP
Sbjct: 48  PAMDTGADDGFVAEIDRILESINAESSPAPPP 79


>07_03_0081 - 13203140-13203822,13204979-13205045
          Length = 249

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 46  FRSTTVLTQPSTGLFLKATPRDGWKQRIFAR*MLC*FTGGRTSCESARIGT 198
           F +T    QP         P D W   I+AR +      GR SCES   GT
Sbjct: 52  FPTTGFELQPGASAAYDGVP-DNWSGNIWARRLCSTDASGRFSCESGDCGT 101


>01_06_0279 +
           28119902-28120058,28120602-28120960,28121314-28121393,
           28121476-28121527,28121621-28121662,28121750-28121828,
           28121991-28122022,28122102-28122170,28122412-28122528,
           28122617-28122667,28123175-28123318
          Length = 393

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 597 PTSFSFRLITCPYHPKRALLNFSVTGAT 514
           P+S    L   PYHPK A  +F+VT  T
Sbjct: 21  PSSAPLLLRAKPYHPKAAACSFTVTATT 48


>12_01_0564 -
           4567650-4568063,4568154-4568624,4568722-4568923,
           4570395-4571104
          Length = 598

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 554 GWYGHVMRRNENEVGKRVLTMNVEGYRGSGRLKKKW 661
           G YGH++    NE+  R+ +  +EGY G   LK  W
Sbjct: 438 GPYGHILLDVNNELSVRIRSAILEGYSG---LKPGW 470


>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
          Length = 340

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +1

Query: 43  PFRSTTVLTQPSTGLFLKATPRDGWKQRIFAR*MLC*FTGGRTSCESARIGT 198
           PF +T     P   L +       W  R++ R   C   GGR SCES   GT
Sbjct: 118 PFPTTGFALPPGASLSVAGVTAT-WSGRVWGR-HRCATGGGRFSCESGDCGT 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,313,822
Number of Sequences: 37544
Number of extensions: 473716
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)