Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0900
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.7  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   2.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   5.2  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    26   5.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   5.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.8  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   9.0  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   9.0  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = -2

Query: 259 GRPQLSFFMTSILRRWYVSNLDSAYSQYPKGI*LLEALTMDQSVQNRWLARANASTSFNR 80
           G+ +L  +  +   R  ++N+ S     P+ +  L    +DQ+ +NR +A  NA+   +R
Sbjct: 628 GKKKLEIYHDTKAGRTTITNITSEPLDTPEQVTWL----LDQASKNRSVAATNANEHSSR 683

Query: 79  *LTSSMLGSCGSSETFDE*CFS 14
             +  ML   GS+ T  E C S
Sbjct: 684 SHSVFMLHLNGSNSTTGETCRS 705


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 130 RSGPLSMLPRVRYPSDTGNTRCRGSKRT 213
           +SG L   P V + SD  N+ CR SK T
Sbjct: 65  KSGILKNKPIVHFMSDISNSACRASKIT 92


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 280 SHIFRFWGRPQLSFFMTSILRRWYVSNLDSAYSQYPKGI 164
           SH+  F     L F +  I + +Y SNLD  Y  + K +
Sbjct: 392 SHMGFFGDHSTLLFQLQPIHQVYYASNLDKNYCMFDKNV 430


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 159 SQIPFGYWEYALSRFETYQRLKIEVIKKDNC-GLPQKRKICEVDI*EVSQ 305
           SQIP     +   +F+    ++  V+ KDNC  LP +  I E ++ ++ +
Sbjct: 31  SQIPCNINYFLEQKFQVPVDIRALVLDKDNCITLPNETTIAEAELKKIRE 80


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +1

Query: 103 SPSPATCSGRSGPLSMLPRVRYPSDTGNTRCRGSKRTNVSRLRS*RRTTAVCPRNEKYAR 282
           SP+P++ +G    +S  P +   + TG +   G  +  VSR+R            + YA 
Sbjct: 276 SPTPSSPTGTPNSMSKSPSLSSLASTGASYRPGPSKPLVSRVR------------DNYAN 323

Query: 283 STYERYPN 306
           ++YE +P+
Sbjct: 324 TSYESWPH 331


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 590 SLINLQSIRIINSSIANLE*KWY-IVLVLKKIKTAPPIVHLKLTSLFNRHITISLCN 423
           S+ NL+ +    SS+  +  KW+ +  VL+  + A  +       +FNRH+T   CN
Sbjct: 538 SINNLEFVLYSLSSLFLMMLKWFRLSHVLRFERLAFLLYENHFLEIFNRHLTEGDCN 594


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 212 VRFEPRQRVFPVSEGYLTLGSIDNGPERPEQVAGEGERFHLVQQMINVIYARL 54
           VR  PR R+ P+  G      + +G   P QV G G    + ++ +   YA +
Sbjct: 312 VRRRPRVRLEPLISGGGQERGLRSGTLAPSQVVGFGTAARICKEEMKYDYAHI 364


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 478 TIGGAVLIFFNTSTIYHFYSKFAMLLLIIRIDCKLISE 591
           TI   VLIFF   TIY FY+ FA+  + + + C  I E
Sbjct: 489 TILFTVLIFF-LPTIYVFYAAFALTRVSV-MTCLAICE 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,730
Number of Sequences: 5004
Number of extensions: 65282
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)