Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0900
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0501 - 29836545-29836640,29836752-29836855,29837034-298370... 63 3e-10
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802... 62 5e-10
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439... 58 1e-08
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 53 2e-07
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 33 0.25
03_02_0418 - 8291605-8291727,8291834-8291999,8292088-8292191,829... 33 0.33
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 30 1.8
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 30 1.8
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 29 5.4
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 28 7.1
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 28 9.4
02_03_0362 + 18158975-18159337 28 9.4
>01_06_0501 -
29836545-29836640,29836752-29836855,29837034-29837081,
29837188-29837305,29837812-29838007,29838089-29838210,
29839409-29839831
Length = 368
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +3
Query: 15 LKHYSSNVSEEPQEPSIDDVNHLLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYAL 194
+K Y SN E EP ++V +LL +E + LASHL W LW I++ + I F Y EYA
Sbjct: 295 VKTYLSNSVSE--EPDAEEVENLLQSIEKYTLASHLVWGLWGIISDHVNDIDFDYKEYAR 352
Query: 195 SRFETYQRLK 224
RFE Y + K
Sbjct: 353 QRFEQYWQKK 362
>05_06_0207 +
26377836-26378201,26379785-26379906,26380025-26380220,
26380642-26380759,26380869-26380916,26380995-26381095,
26381178-26381285
Length = 352
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/61 (42%), Positives = 36/61 (59%)
Frame = +3
Query: 30 SNVSEEPQEPSIDDVNHLLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFET 209
S +S +EP + VN+L+ +E + LASHL W LW I++ + I F Y YA RFE
Sbjct: 278 SYLSSSGEEPDAEKVNNLIKSIEKYTLASHLIWALWGIISEHVNDIDFDYMGYARQRFEQ 337
Query: 210 Y 212
Y
Sbjct: 338 Y 338
>01_01_0589 +
4394154-4394513,4394641-4394762,4394862-4395057,
4395275-4395392,4395499-4395546,4395691-4395791,
4395893-4396000
Length = 350
Score = 57.6 bits (133), Expect = 1e-08
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 36 VSEEPQEPSIDDVNHLLNEVEAFALASHLFWTLWSIVNAS-KSQIPFGYWEYALSRFETY 212
+S + PS +V HLL + ++LASH+FW LW I++ I F Y EYA RF+ Y
Sbjct: 278 LSSSGENPSDAEVEHLLGLIAKYSLASHIFWGLWGIISGHVNKNIDFEYQEYARQRFDQY 337
Query: 213 QRLKIEVI 236
+ K + +
Sbjct: 338 WKTKDQTL 345
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 53.2 bits (122), Expect = 2e-07
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 42 EEPQEPSIDDVNHLLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFETYQR 218
+ P E + D++ L E + LASH++W LW+++ A S I F Y Y R++ Y++
Sbjct: 290 DRPSEVQLQDLDALYVETNTYRLASHIYWALWALIQAKVSPIDFDYLGYFFLRYDEYKK 348
>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 33.1 bits (72), Expect = 0.25
Identities = 32/101 (31%), Positives = 50/101 (49%)
Frame = -1
Query: 470 KLTSLFNRHITISLCNSAHSLKNTAT*LGMVTSVRTFYVTTPSIDLIRQLHGPSQLGYLS 291
++TS F+ H+ ISL S++ A+ L MVT +R Y P LI + S L L
Sbjct: 907 EITS-FDGHMPISLFTSSYKSFTFASLLEMVT-MRLLYYRAP---LILLVFNSSILFPLP 961
Query: 290 YVDLAYFSFLGQTAVVLLYDLNLETLVRFEPRQRVFPVSEG 168
Y++L + + T LL + N RF R+ P+++G
Sbjct: 962 YMNLYFVTGNWPTPSPLLVEGNGAVAGRFASGGRLLPLADG 1002
>03_02_0418 -
8291605-8291727,8291834-8291999,8292088-8292191,
8292280-8292456
Length = 189
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 164 LTLGSIDNGPERPEQVAGEGERFHLVQQMINVIYARLL 51
LTLG +D R EQV GEG +MI + Y RL+
Sbjct: 48 LTLGHLDRAIHRAEQVIGEGNMLEAF-EMIEMYYKRLI 84
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/85 (22%), Positives = 34/85 (40%)
Frame = -1
Query: 314 PSQLGYLSYVDLAYFSFLGQTAVVLLYDLNLETLVRFEPRQRVFPVSEGYLTLGSIDNGP 135
P LG ++ + ++S G + ++D R P + + +G P
Sbjct: 122 PKLLGLVTQTSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGAP 181
Query: 134 ERPEQVAGEGERFHLVQQMINVIYA 60
ERP+ V G + F + QQ + A
Sbjct: 182 ERPQLVKGNMQLFSVDQQRSQALEA 206
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/85 (22%), Positives = 34/85 (40%)
Frame = -1
Query: 314 PSQLGYLSYVDLAYFSFLGQTAVVLLYDLNLETLVRFEPRQRVFPVSEGYLTLGSIDNGP 135
P LG ++ + ++S G + ++D R P + + +G P
Sbjct: 122 PKLLGLVTQTSVYHWSIEGDSEPAKMFDRTANLANNQIINYRCDPSEKWLVLIGIAPGAP 181
Query: 134 ERPEQVAGEGERFHLVQQMINVIYA 60
ERP+ V G + F + QQ + A
Sbjct: 182 ERPQLVKGNMQLFSVDQQRSQALEA 206
>10_08_0472 -
18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +1
Query: 97 KRSPSPATCSGRSGPLSMLPRVRYPSDTGNTRCRGSKRTNVSRLRS*RR 243
K SPSPA PL LP +R+P R R S + +RLR+ RR
Sbjct: 9 KPSPSPAPAPLLFAPLKPLPLLRFPP----RRPRASSSSVGARLRAGRR 53
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 69 DVNHLLNEVEAFALASHLFW--TLWSIVNASKSQIPFGYWEYALSRFETYQRLKIEVIKK 242
D NH L + +AL F+ + I A + +I W + + ET+++LK+ ++K
Sbjct: 813 DFNHELIDAFLYALVKGGFFDMAMQVIEKAQELKIFLDKWRHKQAFMETHKKLKVAKLRK 872
Query: 243 DN 248
N
Sbjct: 873 RN 874
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 147 NASKSQIPFGYWEYALSRFETYQRLKIEVIKKDNCGLPQKRKICEVDI*EVSQLTGA 317
N+ KS +P G + + T E K LPQKRK+ VD+ ++S + A
Sbjct: 1284 NSLKSPVPIGNVDNMICAASTVNTGDAETSHKTPLSLPQKRKL--VDMKDLSSASAA 1338
>02_03_0362 + 18158975-18159337
Length = 120
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 88 TRWKRSPSPATCSGRSGPLSMLPRVRYPSDTGNTRCRGSKR 210
+RW P ATC G SG + L D+G C GS R
Sbjct: 38 SRWDARPRCATCGG-SGRVDCLCNRWSDGDSGCRTCAGSGR 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,273,063
Number of Sequences: 37544
Number of extensions: 424900
Number of successful extensions: 1101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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