Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0900
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58734-2|AAB52502.1| 342|Caenorhabditis elegans Choline kinase ... 48 6e-06
Z82259-2|CAB05129.1| 474|Caenorhabditis elegans Hypothetical pr... 45 5e-05
U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase... 38 0.008
U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase... 38 0.008
U58734-3|AAO91673.1| 326|Caenorhabditis elegans Choline kinase ... 36 0.032
Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical pr... 32 0.39
AL132863-1|CAB60573.1| 477|Caenorhabditis elegans Hypothetical ... 28 6.4
AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinas... 28 8.4
>U58734-2|AAB52502.1| 342|Caenorhabditis elegans Choline kinase c
protein 1, isoforma protein.
Length = 342
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +3
Query: 102 FALASHLFWTLWSIVNASKSQIPFGYWEYALSRFETYQRLKIEVIKK 242
F A+HLFW +W++V A S I F Y YA +R++ YQ+ + I K
Sbjct: 293 FEAAAHLFWAVWALVQAQNSTIDFDYLTYAHARYQQYQKRLHKYISK 339
>Z82259-2|CAB05129.1| 474|Caenorhabditis elegans Hypothetical
protein C28D4.2 protein.
Length = 474
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 69 DVNHLLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFETY 212
D+N ++ E F S++FW WS++NA +S I F Y Y R Y
Sbjct: 413 DLNKIIEESILFMPVSNIFWVCWSLINAEESSIAFDYGAYGRDRLALY 460
>U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase a
protein 2, isoformb protein.
Length = 408
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 81 LLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFETYQRLK 224
L+ E F SH FW +W ++ S + FG+ +Y R Y + K
Sbjct: 351 LVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHK 398
>U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase a
protein 2, isoforma protein.
Length = 429
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 81 LLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFETYQRLK 224
L+ E F SH FW +W ++ S + FG+ +Y R Y + K
Sbjct: 372 LVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHK 419
>U58734-3|AAO91673.1| 326|Caenorhabditis elegans Choline kinase c
protein 1, isoformb protein.
Length = 326
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 102 FALASHLFWTLWSIVNASKSQIPFGY 179
F A+HLFW +W++V A S I F Y
Sbjct: 293 FEAAAHLFWAVWALVQAQNSTIDFDY 318
>Z83104-7|CAH60780.1| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +3
Query: 30 SNVSEEPQEPSIDDVNHLLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFET 209
SN+ + + PS+ LL ++ F+LA+ W+ V A + + Y E L+ E
Sbjct: 248 SNIHSDSELPSLVLKTRLL--LQHFSLAAIKLWSQLEAVRACRYETKSNYTETYLNETEE 305
Query: 210 YQRLKIEVIKKDNCGLPQKRKICEVD 287
+ +K+ + NC IC+++
Sbjct: 306 EKMVKLGSLITHNCCPSNNMHICDLN 331
>Z70685-2|CAA94606.2| 762|Caenorhabditis elegans Hypothetical
protein R07D5.2 protein.
Length = 762
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +3
Query: 30 SNVSEEPQEPSIDDVNHLLNEVEAFALASHLFWTLWSIVNASKSQIPFGYWEYALSRFET 209
SN+ + + PS+ LL ++ F+LA+ W+ V A + + Y E L+ E
Sbjct: 248 SNIHSDSELPSLVLKTRLL--LQHFSLAAIKLWSQLEAVRACRYETKSNYTETYLNETEE 305
Query: 210 YQRLKIEVIKKDNCGLPQKRKICEVD 287
+ +K+ + NC IC+++
Sbjct: 306 EKMVKLGSLITHNCCPSNNMHICDLN 331
>AL132863-1|CAB60573.1| 477|Caenorhabditis elegans Hypothetical
protein Y37H2A.1 protein.
Length = 477
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +3
Query: 21 HYSSNVSEEPQEPSIDDVNHLLNEVEAFA-LASHLFWTLWSIVNASKSQIPFGYWEYALS 197
H S +E + + ++E F + H F W + Q P Y+ Y +
Sbjct: 334 HCRSGQKGRAEEQCLRILKKKMDENHKFLKIHRHCFTETWEVAQMWMKQCPNVYFGYTAA 393
Query: 198 RFETYQRLKIEVIKKDNCGLPQKRKICEVD 287
F+ +R ++E I+ +P R + E D
Sbjct: 394 IFKMRERQQLEAIRH----IPLNRILLETD 419
>AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinase b
protein 4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 69 DVNHLLNEVEAFALASHLFWTLWSI-VNASKSQIPFGYWEYALSRFETYQRLK 224
+V L+ E + F ++FW +WS+ + +K +I A RF Y LK
Sbjct: 317 EVESLMLECKFFIPLVNMFWAVWSLRQHLAKYEIGMDLDVIASDRFSMYFHLK 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,107
Number of Sequences: 27780
Number of extensions: 366115
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -