Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0900
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 675 SHYQHHY*RNY*IGFLSYITFLFVLSISL 589
           SH +  Y +N  IGF+  +TFL + S+ +
Sbjct: 866 SHLRELYLQNNLIGFIGNLTFLPLRSLEI 894


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 290 MRGIPTDWGRAAVGLNR 340
           ++GIP  WGRA    NR
Sbjct: 544 VKGIPCSWGRAINVANR 560


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 169  PSDTGNTRCRGSK 207
            PSD  NTR +GSK
Sbjct: 1448 PSDMLNTRTKGSK 1460


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 287 VDLAYFSFLGQTAVVLLYDLNLETLVR 207
           VD+A    L     + ++DL  +TL+R
Sbjct: 267 VDIAKGGKLACPPAIFIFDLTTDTLIR 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,900
Number of Sequences: 438
Number of extensions: 4493
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)