Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0899
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.19 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 155 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELSIGSMRFTTFD 319
           L K+   +  +G  + GKTTLL  L++  +A+         +      L  G  R T  D
Sbjct: 141 LIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQCIGAFDVTLESGE-RVTFLD 199

Query: 320 LGGHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNK 499
             GH     +        D +V +V A D  +  E   +   +  D   +  P+++  NK
Sbjct: 200 TPGHAAFISMRHRGAHITDIVVLVVAADDGVK--EQTLQSIEMAKD---AKVPIIVAINK 254

Query: 500 IDKP 511
           IDKP
Sbjct: 255 IDKP 258


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 395  DACDRPRLPESKAELDSL 448
            D  DRP L E++ ++DSL
Sbjct: 1877 DRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 395  DACDRPRLPESKAELDSL 448
            D  DRP L E++ ++DSL
Sbjct: 1873 DRSDRPELSEAECDIDSL 1890


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 507 NPVLPVKTNYVTFSICIS 560
           NP +   TNY  FS+ IS
Sbjct: 68  NPAMQTATNYYLFSLAIS 85


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 146 FLGLWKKSGKLLFLGLDNAGKTTL 217
           F+  +K  GK+L L +  AGK+ +
Sbjct: 127 FVADYKIEGKVLLLPVRGAGKSNI 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,442
Number of Sequences: 438
Number of extensions: 3310
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)