Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0897
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.8  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   5.4  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 513 VNVFVTFTDNHNIPTIRFSFFKNVILVN*VVYYQRW---PICIFG 388
           +NV  TF  NH++P I  +      ++N + +   W   PI  +G
Sbjct: 314 INVLGTFIGNHDLPRISHNNTDQARIMNAITFVMMWDGIPIIYYG 358


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 494 LPTITIYPQSVFHSLKM*YLSI 429
           LP  T+YPQ +FH  +  +L I
Sbjct: 570 LPNFTLYPQFIFHLRRSPFLHI 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,741
Number of Sequences: 5004
Number of extensions: 56612
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)