Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0896
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   2.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   5.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   5.4  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    24   5.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   5.4  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    23   9.4  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 183  LWNFLLKFLLSIIYIWDLLLTTFHVL 260
            LW+ ++  L+  I +W +LL+   +L
Sbjct: 2177 LWSIIILLLIFFIVVWAVLLSVIKIL 2202


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 158 H*YL*QKGIMEFPLKIFAFDN 220
           H ++ ++ I++FPL +  FDN
Sbjct: 711 HLFIPKEEILDFPLNVLQFDN 731


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 32  LNFNSISPKSKKYIRTNSTKTYLKNKT 112
           LNF  ++  SKK I TN    YLK  T
Sbjct: 763 LNFTVVTKTSKKQILTN-VSGYLKKNT 788


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 42  ILSPQKVKNTSVPIQQXXXXXXXXXXXXNYVNT*HILY 155
           I +P + +N  +P+Q             N V+T H LY
Sbjct: 257 IFAPLRFQNQQLPLQHVYAFLFSIAYRDNQVDTAHFLY 294


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 201 KFLLSIIYIWDLLL 242
           KFLLS++Y+ DL+L
Sbjct: 649 KFLLSLVYLTDLVL 662


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 180 PFCHKY*WNIICAMY 136
           P  HKY W++I  MY
Sbjct: 354 PLDHKYSWDLISEMY 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,193
Number of Sequences: 5004
Number of extensions: 23131
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)