Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0896
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   4.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   9.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   9.2  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 171 DRKELWNFLLKF 206
           DR+ELW F + F
Sbjct: 370 DRQELWIFTISF 381


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 KFLLSIIYIWDLLLTTFHVLLF 266
           K  ++ I+IW  ++    ++LF
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILF 239


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 192 FLLKFLLSIIYIWDLLL 242
           F + F+L II  W +LL
Sbjct: 370 FPILFMLFIILYWPILL 386


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 KFLLSIIYIWDLLLTTFHVLLF 266
           K  ++ I+IW  ++    ++LF
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILF 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,462
Number of Sequences: 438
Number of extensions: 1692
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)