Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0896
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38640.1 68417.m05469 choline transporter-related contains we...    28   1.8  
At5g20310.1 68418.m02417 hypothetical protein                          27   2.4  
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi...    25   9.5  
At1g69520.1 68414.m07990 methyltransferase-related weak similari...    25   9.5  

>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 165 ICDRKELWNFLLKFLLSIIYIWDLLLTTFHVLLFIGYNLRTKFVLNPITF 314
           + ++  +W  ++  +LS+ + + +LL   H    I Y     FVL PI F
Sbjct: 137 VFEKDLIWTLVVTLILSVPFCFSVLLLLKHYTKQIVYACLPLFVLFPIFF 186


>At5g20310.1 68418.m02417 hypothetical protein
          Length = 394

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 120 ILVVLFLRYVFVELVRMYFL 61
           ILVVLFL Y++  L ++YF+
Sbjct: 375 ILVVLFLFYIYFTLRKLYFM 394


>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
           to Pig-o [Mus musculus] GI:8099973
          Length = 897

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 222 YIWDLLLTTFHVLL 263
           YIW  +++TFH+LL
Sbjct: 542 YIWHFMVSTFHLLL 555


>At1g69520.1 68414.m07990 methyltransferase-related weak similarity
           to SP|Q05197 Phosphatidylethanolamine
           N-methyltransferase (EC 2.1.1.17) {Rhodobacter
           sphaeroides}; contains domain similarity with PF01209:
           methyltransferase, UbiE/COQ5 family
          Length = 262

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 50  SPKSKKYIRTNSTKTYLKNK 109
           +PK KKY R ++TK  LK K
Sbjct: 117 NPKMKKYARKSATKAGLKPK 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,850,132
Number of Sequences: 28952
Number of extensions: 98923
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)