Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0895
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    31   0.23 
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch...    27   2.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.8  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   3.7  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   4.9  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    26   6.4  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    26   6.4  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 20/53 (37%), Positives = 31/53 (58%)
 Frame = +3

Query: 360 LMLSKVFFSLMNESPLDLMGMTNIRPLKSYVLFTSKLTRAWAAIIFLSMSNFK 518
           LML  +F++L NES  +L    ++  L + ++FT+  T +   IIFL  S FK
Sbjct: 444 LMLGSLFYNLRNESS-ELYSRGSV--LSNAIVFTAIQTMSEVDIIFLKKSLFK 493


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 247 NDKNLGEQINKILNGLSQQIVDEVGPT 167
           N + LG Q +++ N LS  IVDEVG T
Sbjct: 575 NKQRLGNQ-SRLANNLSDAIVDEVGRT 600


>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 208

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 223 FVHLSFCHSVSFPSETQPFLPHIQ-RRG*KFS-SELYRLHLQYPRNK 357
           FV  + CH V F     P  PHI   RG K   ++ ++  LQY  +K
Sbjct: 48  FVDWAVCHKVDFEEMQLPTAPHITLARGIKLKPNQSFKSVLQYIASK 94


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 396 ESPLDLMGM-TNIRPLKSYVLFTSKLTRAWAAIIFLSMSNFKFCNVKDDNPVK*LSLNTT 572
           E  L ++G+ T+   L+S++L + K   AW  +    M  + FC ++DD+ +   ++ T+
Sbjct: 79  ECCLQILGIATSYTILRSWLL-SRKHIEAWIELAIRRMF-YSFCAIQDDSNISIYAIGTS 136

Query: 573 LK 578
            K
Sbjct: 137 SK 138


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 669 SFHWAILKEVYHPWTLCTWRTWWFMS 592
           SF+WA L  ++ P T   W    F+S
Sbjct: 319 SFNWASLSALFQPMTFAKWSIPLFLS 344


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -1

Query: 307 FNHDVE-YEVEKAVFR---LENLLNDKNLGEQINKILNGLSQQIVDEVGPTICGSLMKAV 140
           +NH V+ Y     VF    L+ L   +N  +Q+N++   L    +DE+      S  K +
Sbjct: 210 YNHSVDLYAFGCIVFEIYSLKPLFPGRNETDQLNRVCEILGNPGIDELDTLHYWSQAKEL 269

Query: 139 VENLGILL 116
            + LG +L
Sbjct: 270 AKRLGFML 277


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 517 LKFDMDKKIIAAQALVNLDVNNTYDLSGRILVIPIKSSGDSFIK 386
           +KF +D +      LV+LD N   D+  +I  IPI  +  + +K
Sbjct: 49  VKFPVDYEKSIGNYLVDLDGNVLLDVYSQIATIPIGYNNPTLLK 92


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 643 LFQDRPVKTGELSSVLILMRNHLNSDLFS 729
           LF DRPV+  EL+  +    + LNSD+ S
Sbjct: 73  LFDDRPVEIQELTFQIKQSLSSLNSDIAS 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,933
Number of Sequences: 5004
Number of extensions: 58885
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)