Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0895
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    35   0.069
AF003142-6|AAK73887.1|  653|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF003142-5|ABQ13067.1|  474|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
            R10E8.6 protein.
          Length = 1696

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
 Frame = -1

Query: 541  LSSLTLQNLKFDMDKKIIAAQALV----NLDVNNTYDLSGRILVI--PIKSSGDSFIKLK 380
            L + T+ NL F   K +  +  L     N D+ N Y+L GR L++          F KL 
Sbjct: 1598 LQNFTVDNLLFMKQKSLSTSIKLFFICENFDMENLYELIGRPLLVTEDAVKVRKWFFKLI 1657

Query: 379  NTLLNINFYYEDIEDADGKVHWKIFNHDVEYEVEKAVFR 263
             TL ++      I   +GK+H ++F   V Y  + A  R
Sbjct: 1658 GTLEHVLLL--RINTENGKIHVQMFRIPVSYVPQNATIR 1694


>AF003142-6|AAK73887.1|  653|Caenorhabditis elegans Hypothetical
           protein F57C9.4a protein.
          Length = 653

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 99  SNDTCSS--KIPKFSTTAFMSDPQIVGPTSSTICCDKPLSILFICSP 233
           S+D CSS  +I K  +TA  SDP I+GP   TI  +       +  P
Sbjct: 57  SSDECSSFIEILKEISTARKSDPSILGPRIETIHSENEYPFQMVIEP 103


>AF003142-5|ABQ13067.1|  474|Caenorhabditis elegans Hypothetical
           protein F57C9.4c protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 99  SNDTCSS--KIPKFSTTAFMSDPQIVGPTSSTICCDKPLSILFICSP 233
           S+D CSS  +I K  +TA  SDP I+GP   TI  +       +  P
Sbjct: 57  SSDECSSFIEILKEISTARKSDPSILGPRIETIHSENEYPFQMVIEP 103


>AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical
           protein F57C9.4b protein.
          Length = 856

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 99  SNDTCSS--KIPKFSTTAFMSDPQIVGPTSSTICCDKPLSILFICSP 233
           S+D CSS  +I K  +TA  SDP I+GP   TI  +       +  P
Sbjct: 57  SSDECSSFIEILKEISTARKSDPSILGPRIETIHSENEYPFQMVIEP 103


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -1

Query: 397 SFIKLKNTLLNINFYYEDIEDADGKVHWKIFNHDVEYE---VEKAVFRLENLLNDKNLGE 227
           +F + K+ LL I +  + I D D  ++W I  HD + +   ++  + +++ ++N   + E
Sbjct: 321 NFAQEKDFLLGIGYLKKIIPDEDAWIYWNINMHDDKKQLMHLQIEILQMQEIVNHGGIAE 380


>AF040652-4|AAB95021.2|  736|Caenorhabditis elegans Hypothetical
           protein T05A8.4 protein.
          Length = 736

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 670 QFSLGDPERGLPPLD-PLYVENMVVYVPNRNGFKVVFKDN 554
           + +LG+  R LP  + PL+   M   +  +NG ++ F DN
Sbjct: 289 KITLGEMRRSLPHFNWPLFFNRMFKDLHEKNGKRITFDDN 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,633,867
Number of Sequences: 27780
Number of extensions: 322483
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)