Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0895
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20560.1 68414.m02563 AMP-dependent synthetase and ligase fam...    33   0.26 
At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase fam...    31   1.1  
At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive eff...    29   2.4  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    29   3.2  
At5g51490.1 68418.m06386 pectinesterase family protein contains ...    29   4.3  
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea...    28   7.4  
At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase fam...    28   7.4  
At1g54570.1 68414.m06223 esterase/lipase/thioesterase family pro...    27   9.8  

>At1g20560.1 68414.m02563 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to adenosine monophosphate binding
           protein 1 AMPBP1 (AMPBP1) GI:20799710
          Length = 556

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 675 FTSFHWAILKEVYHPWTLCTWRTWWFMSLIETVSKLCSR 559
           F+ FH   L E Y P T+CTW+  W     E  +K+ +R
Sbjct: 326 FSMFHSYGLTETYGPGTICTWKPEWDSLPREEQAKMKAR 364


>At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 7 AMPBP7 (AMPBP7)  GI:20799722
          Length = 569

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 693 NQHGTQFTSFHWAILKEVYHPWTLCTWRTWWFMSLIETVSKLCSR 559
           NQ G  F   H   L E Y P T+C W+  W     ET +KL +R
Sbjct: 333 NQKG--FRVAHTYGLSETYGPSTVCAWKPEWDSLPPETQAKLNAR 375


>At5g37150.1 68418.m04460 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 839

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/72 (20%), Positives = 33/72 (45%)
 Frame = -1

Query: 403 GDSFIKLKNTLLNINFYYEDIEDADGKVHWKIFNHDVEYEVEKAVFRLENLLNDKNLGEQ 224
           G  F      +  +    + +E+ +GK    ++  +    +E+   R E ++N   +GE 
Sbjct: 341 GKLFSPFSGWMQRLESLIQFLENPEGKYERHVYELEEVERMEEEAERQEVVVNIPTIGEF 400

Query: 223 INKILNGLSQQI 188
           + K  N LS+++
Sbjct: 401 VKKNFNSLSEEV 412


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
            similar to DNA helicase HEL308 [Homo sapiens]
            GI:19110782; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 191  NRRRSWTNNLR-ITHEGCCRKL 129
            NR   W N +R + H GCCR++
Sbjct: 1080 NRSGRWRNQIRRVAHNGCCRRV 1101


>At5g51490.1 68418.m06386 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 536

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = -1

Query: 619 YVENMVVYVPNRNGFKVVFKDNYFTGLSSLTLQNLKFDMDKKIIAAQALVNLDVNNTYDL 440
           Y +    Y  N NGF+        T LS   +  ++  MD+ I A   L N   N T   
Sbjct: 43  YPDPCKCYFKNHNGFQQP------TQLSEFRVMLVEAAMDRAISARAELTNSGKNCTDSK 96

Query: 439 SGRILVIPIKSSGDSFIKLKNTLLNIN 359
              +L   I   GD+ ++L  TL  ++
Sbjct: 97  KQAVLADCIDLYGDTIMQLNRTLHGVS 123


>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Retinoblastoma-binding protein 5 (RBBP-5)
           [Homo sapiens](RBQ-3)
          Length = 547

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 400 DSFIKLKNTLLNINFYYEDIEDADGKVHWK--IFNHDVEYEVEKAVFRLENLLNDKNLGE 227
           D   K+K         + + +D+  K+HWK   F+ D E+ V  +  + E+ +   +   
Sbjct: 267 DGIEKMKTVGSKCLTLFREFQDSVTKMHWKAPCFSGDGEWVVGGSACKGEHKIYIWDRAG 326

Query: 226 QINKILNGLSQQIVD 182
            + KIL G  + ++D
Sbjct: 327 HLVKILEGPKEALID 341


>At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 2 AMPBP2 (AMPBP2) GI:20799712
          Length = 603

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 675 FTSFHWAILKEVYHPWTLCTWRTWWFMSLIETVSKLCSR 559
           F   H   L E Y P T C W+  W    +E  +KL +R
Sbjct: 380 FNVSHLYGLTETYGPGTHCVWKPEWDSLSLEERTKLKAR 418


>At1g54570.1 68414.m06223 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 704

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 724 KDPNLNDCALKSARNSVHQFSLGDPERGLPPLDPLYVENMVVYVPNR 584
           K P LND   +  R++  QF L +   G     PLY+  ++  VP R
Sbjct: 584 KIPILNDYITEVTRDT-KQFKLREESEGEVANQPLYLPGLIPKVPGR 629


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,453,540
Number of Sequences: 28952
Number of extensions: 291812
Number of successful extensions: 844
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)