Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0894
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar... 185 7e-48
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 30 0.33
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 1.8
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 27 2.3
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 27 3.1
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 27 3.1
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 27 4.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 4.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 7.2
>SPAC15E1.06 |vps29||retromer complex subunit
Vps29|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 185 bits (450), Expect = 7e-48
Identities = 86/185 (46%), Positives = 127/185 (68%), Gaps = 4/185 (2%)
Frame = +2
Query: 92 MLVLVLGDLHIPHRCSSLPAKFKKLLLPGRIQHILCTGNLCTKDSYDYLKTLASDVHVVR 271
MLVLV+GD HIP R L KF++LL+PG+I I+C GNL + Y+YLK + SD+ +V+
Sbjct: 1 MLVLVIGDFHIPDRAPKLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVK 60
Query: 272 GDFDENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEESLALIQRQLDVDILISGHTHRFE 451
G FD ++ P +T+G F+IG +GH VVP E+L+++ R++D DIL+ G TH+F
Sbjct: 61 GAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFA 120
Query: 452 AYEHENKFYINPGSATG--GYSPLYRDP--TPSFVLMDIQSSTVVTYVYKLLGDEVKVER 619
AYE + F++NPGSATG S + D PSFVLMD+Q + ++ YVY++ EV+VE+
Sbjct: 121 AYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQGAVLILYVYRIFDGEVRVEK 180
Query: 620 IEYKK 634
++Y+K
Sbjct: 181 MQYRK 185
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -2
Query: 643 RSCLLVFNSFNFDFITEELVNVGDHCRTLNVHQHKRRSRIPV*RAVTSSS*TRIDIELIL 464
R+CL + + E+ + + H RTLN +HK SRI V + T + D ++ L
Sbjct: 432 RACLAGNGNVHPSIKMEKNLELNPHPRTLNATEHKINSRIQVSKLNTKNELANADPKMYL 491
Query: 463 V 461
+
Sbjct: 492 L 492
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 561 VRQWSPTFTSSSVMKSKLKELNTRRHDLLYVPPFSNMSEY 680
V Q +PTF +K + EL R+D++ P F N++E+
Sbjct: 2003 VSQNNPTFKICYDLK--IHELGKERYDIIATPLFQNLTEF 2040
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 579 TFTSSSVMKSKLKELNTRRHDLLYVPPFSNM-SEYYNRSVTLVYEFIWLNTYTYF*YDAI 755
T+T+ + +K ++++ HD YV +++ S+ Y+ + + +W +T +D +
Sbjct: 560 TYTTQAELKKLMRKVEIALHDAEYVSTLASIFSKDYSYPKESLQD-LWRDTLLCQFHDVL 618
Query: 756 PG-CTEQI 776
PG C E +
Sbjct: 619 PGSCIEMV 626
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 329 FRIGLIHGHQVVPWGDEESLALIQRQLDVDILISGHTH 442
F IG GH ++ G SL L ++Q + LIS + H
Sbjct: 250 FVIGAYSGHHLLGQGQASSLNLAEQQAAYNSLISYYIH 287
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 62 LYKRTNIPYKMLVLVLGDLHIPHRCSSLPAKF 157
L K +PYK +V +LG+ H H S+P F
Sbjct: 307 LLKGEKLPYK-IVTILGNAHAMHVIISVPPSF 337
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 443 RFEAYEHENKFYINPGSATGGYSPLYRDPTPSF 541
+FEA+E+E F + G+ + + P + PT SF
Sbjct: 22 QFEAFENEFYFKDHLGTISVYHEPYFNGPTTSF 54
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 549 ISTNEGVGSLYKGL*P 502
I TNEG G+LY+GL P
Sbjct: 166 IVTNEGFGTLYRGLAP 181
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +3
Query: 468 ISSISILVQLLEVTALYTGILLLRLC*WTFRVRQWSP-----TFTSSSVMKSKLKELNTR 632
I + ++LV+ T L L + F W P TF+++++MK + E+N
Sbjct: 1650 IENFNVLVKDWSTNLSATTSLTLHCNAFNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNIN 1709
Query: 633 RHDLLYV 653
D+ +
Sbjct: 1710 SDDIAQI 1716
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,092
Number of Sequences: 5004
Number of extensions: 79451
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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