Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0894
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 29   4.4  
SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7)                 29   5.8  
SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_24707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_25765| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1346

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 385 RLFIAPRDYLVSMNQSNAELSNCDDFLL 302
           RLF A  +YL   N +N   +NCDDFLL
Sbjct: 385 RLFKAA-NYLTYNNVTNVTRANCDDFLL 411


>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 377 EESLALIQRQLDVDILISGHTHRFEAYEHENKFYI-NP 487
           + +L  IQ+  D+D+++SGHTH  + +      Y+ NP
Sbjct: 244 QAALQAIQQYPDIDLVLSGHTHGGQFFPLHIPIYLWNP 281


>SB_12433| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 1234

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 353  HQVVPWGDEESLALIQRQLDVDILISGHTHRFEAYEHENKFYINPGSATGGYSPL 517
            H  + WGD   +    R+  +DIL   HTH+ + +      Y N    T GYSP+
Sbjct: 1017 HGTIMWGDRVVVLPKLRRRVLDILHESHTHKLDRFLFA---YRNAPHPT-GYSPV 1067


>SB_24603| Best HMM Match : GatB_Yqey (HMM E-Value=0.7)
          Length = 984

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 444 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 352
           RC+C D R   S+C C  A  SS     +G  WC
Sbjct: 669 RCLCEDCRKPYSTCDCGSAAPSSRLHDIKGRIWC 702


>SB_23543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 444 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 352
           RC+C D R   S+C C  A  SS     +G  WC
Sbjct: 554 RCLCEDCRKPYSTCDCGSAAPSSRLHDIKGRIWC 587


>SB_24707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 921

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 444 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 352
           RC+C D R   S+C C  A  SS     +G  WC
Sbjct: 732 RCLCEDCRKPYSTCDCGSAAPSSRLHDIKGRIWC 765


>SB_25765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -3

Query: 444 RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 352
           RC+C D R   S+C C  A  SS      G  WC
Sbjct: 129 RCLCEDCRKPYSTCDCGSAAPSSRLHDINGQIWC 162


>SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -3

Query: 444  RCVCPDIRMSTSSCLCIKARDSS---SPQGTTWC 352
            RC+C D     S+C C  A  SS     +G TWC
Sbjct: 1091 RCLCEDCGKPYSTCDCGSAAPSSRLHDIKGRTWC 1124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,510,464
Number of Sequences: 59808
Number of extensions: 590406
Number of successful extensions: 1765
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)