Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0893
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.1  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.4  

>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 609 ICPLFFFFFVRKMFEGYCVKFSCKLSLL 692
           IC LFFFFFV +  + Y ++    L LL
Sbjct: 13  ICVLFFFFFVSRFNDKYELQPLLTLGLL 40


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 328  VNGELISPYPPIDPGYC*IRNKKSCLVRKFSSAYVHISIDVVSGGEVADP 477
            V  E+ SPY P+ P    + N +  L     +AYV  +I    G   + P
Sbjct: 1721 VGAEMASPYQPLQPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAP 1770


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 328 VNGELISPYPPIDPGYC*IRNKKSCLVRKFSSAYVH 435
           ++G++++ +PP   GY  I + K+ L+ ++ +   H
Sbjct: 203 IDGKVVTRFPPEPSGYLHIGHAKAALLNQYFANKYH 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,148
Number of Sequences: 5004
Number of extensions: 61171
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)