Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0893
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06500.1 68415.m00720 hAT dimerisation domain-containing prot...    31   0.88 
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea...    28   8.2  

>At2g06500.1 68415.m00720 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 582

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 127 ASEFNYGREYFLVYLDQNFLKLISRIQS*VRAKKNFRLFF*LAKLSQGSNNQVWA 291
           ++E ++   YFL  +DQ  + L SR +   R ++ F   F L KL+  ++  + A
Sbjct: 394 STEEDFRINYFLTLIDQALISLESRFEQFQRYEQTFGFLFDLQKLTYANDENLMA 448


>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
           family protein similar to PAK/PLC-interacting protein 1
           (GI:4211689)  {Homo sapiens}
          Length = 1115

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 381 SAVSWVYWGIGRYELTVHPALCS 313
           SA+S +YWGI   E ++HP  CS
Sbjct: 68  SALSNLYWGIDSIEASIHPE-CS 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,974
Number of Sequences: 28952
Number of extensions: 299400
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)