Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0891
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26920.1 68416.m03368 F-box family protein contains F-box dom...    29   4.4  
At5g15790.2 68418.m01847 zinc finger (C3HC4-type RING finger) fa...    28   5.8  
At5g15790.1 68418.m01846 zinc finger (C3HC4-type RING finger) fa...    28   5.8  

>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 565

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 617 MYNYENLQTISQ*HCFNIDFPF 552
           +YN E L+T+   HC  ID PF
Sbjct: 43  LYNSETLETLELYHCILIDVPF 64


>At5g15790.2 68418.m01847 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 232

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 407 SSSLNRKFGCIRNIFDDFINVIVTLFQ 327
           SSS+NR   C R + ++F+N+ ++LF+
Sbjct: 20  SSSVNRSCPCPRCLVNNFLNLYISLFR 46


>At5g15790.1 68418.m01846 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 232

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 407 SSSLNRKFGCIRNIFDDFINVIVTLFQ 327
           SSS+NR   C R + ++F+N+ ++LF+
Sbjct: 20  SSSVNRSCPCPRCLVNNFLNLYISLFR 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,067
Number of Sequences: 28952
Number of extensions: 242119
Number of successful extensions: 364
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)