Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0890
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   2.4  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    27   2.4  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.1  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   9.6  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 486  MTLTDAINEDFYNFWKEGYEIKNRE 412
            +T T+ +  + YNFWK  Y  +N E
Sbjct: 2043 ITFTELLKNEDYNFWKHPYIKRNDE 2067


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 492 KEMTLTDAINEDFYNFWKEGYEIKN 418
           K + + +AIN+DF  F  EG++ +N
Sbjct: 162 KGLNIPEAINKDFAQFLTEGFKARN 186


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 374 TCSTLKET-FITETLWSLPRNMEPMRRWPNN*ST*CMAAKSPLQLTMTSVSGPSVSRPAS 198
           T S++KET F+TETL   P N  P   +    ++     ++ +  T T +   +VS  AS
Sbjct: 139 TLSSVKETDFVTETLILSPDNQAPRMSFVGKPNSVAEIVRTVMHQTSTRI---NVS-TAS 194

Query: 197 KLKST 183
           K K+T
Sbjct: 195 KTKNT 199


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 552 SQEVMKNLSLNF-GKALD-ECKKEMTLTDAINEDFYNFWKEGYEIKNRETGCAIMCLSTK 379
           SQE  + L L+F  K L+ +C K ++  +A++ DF       YE K+ +T        T 
Sbjct: 400 SQE--ERLCLDFLEKCLELDCNKRISAEEALDHDFLYLDNLAYEKKDDDTAFDNSFGETS 457

Query: 378 LNMLDPEGNLHHGNAMEFAKKHGADE 301
               +     H  + ++F ++   DE
Sbjct: 458 FEKDEDLTAKHLSHILDFKEQEETDE 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,843
Number of Sequences: 5004
Number of extensions: 68334
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)