Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0890
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0415 + 3292576-3293727                                           30   2.5  
11_01_0407 + 3090880-3092010                                           30   2.5  
09_02_0001 - 2857651-2857923,2858089-2858283                           29   4.4  

>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 206 VATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPC 316
           +A PR   H + LA   ++  C + +  WA+V++ PC
Sbjct: 219 LAAPRA--HEAGLAAPVYAMGCVLHLVAWALVAAVPC 253


>11_01_0407 + 3090880-3092010
          Length = 376

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 206 VATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPC 316
           +A PR   H   L    +S  C + ++ WA+V++ PC
Sbjct: 212 LAAPRA--HEGGLVAPVYSMGCLLHLAAWALVAAVPC 246


>09_02_0001 - 2857651-2857923,2858089-2858283
          Length = 155

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 636 FQIESKMSIQGQIALALMVYMAVG-SVDASQE 544
           F I++K  + G + +ALM+  AVG SVD  QE
Sbjct: 59  FAIKNKQQVAGPVLVALMMASAVGSSVDFGQE 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,350,645
Number of Sequences: 37544
Number of extensions: 438267
Number of successful extensions: 982
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)