Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0888
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.63 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.83 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.3  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 106 IHYEFFKNYEILRNVLFGLTATNTILKH 23
           ++Y F K    LR VL  L     ILKH
Sbjct: 47  LNYNFTKKCYFLRMVLIDLLIVGCILKH 74


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 47   C*TEQNVPENFIVFKKLIM 103
            C TEQ+VPE  I  K L+M
Sbjct: 1194 CQTEQDVPEAPIAVKALVM 1212


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 65  RFVRSNSNEYNTETQSCVHNL 3
           ++VR  +  Y+T    C+H L
Sbjct: 342 QYVRHKNTPYHTPEPDCIHEL 362


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 114  FCLQSPLISVLRRRPQSVSN*RYHVVKWL*YPSGYDVHLRY--FGLGNGAFRVLDVHMYN 287
            FC+ +  I      PQ  +  +Y V+ ++  PS Y + + Y  F + N ++   +V +  
Sbjct: 982  FCMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVVP 1041

Query: 288  IREPS 302
              +P+
Sbjct: 1042 KPDPN 1046


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 114  FCLQSPLISVLRRRPQSVSN*RYHVVKWL*YPSGYDVHLRY--FGLGNGAFRVLDVHMYN 287
            FC+ +  I      PQ  +  +Y V+ ++  PS Y + + Y  F + N ++   +V +  
Sbjct: 982  FCMAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLLLVIYSVFNMNNVSWGTREVTVVP 1041

Query: 288  IREPS 302
              +P+
Sbjct: 1042 KPDPN 1046


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,168
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)