Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0888
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.7  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   6.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.2  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   8.2  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.2  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +1

Query: 211 VDMMSTYDILASETGRFGFSMSICTIFGSLQEKVTNYER*RHNLKDFHVGLCRVCQWCSL 390
           +D  S++++  SE     FS+ +CT    + EK  +        + + V  C VC    L
Sbjct: 466 LDYYSSHNVTISEDDLKNFSLVLCTHVAKVNEKTNSI------FRTYEVHGCEVCNSFCL 519

Query: 391 IWN 399
           +++
Sbjct: 520 LFD 522


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +2

Query: 239 WPRKRGVSGSRCPYV---QYSGAFKKKLQIMNDDVII 340
           WP  R  S  RCP+V   +Y  +  K L   ND  ++
Sbjct: 310 WPTFRATSIGRCPFVPETKYRLSTSKSLVAKNDQQLL 346


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 460 FNLSVEVDTSVYYY*LQNLKKRYKQFTDN 546
           FN+S++VD  V YY +      YK +  +
Sbjct: 866 FNMSIDVDGGVLYYCINTSPDVYKAWASS 894


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 406 KSHSKLMNTIDTPDITQHENLSNYDVIVHN 317
           K H KL ++I +   TQHE  +  + I+H+
Sbjct: 145 KKHVKLNSSISSIRFTQHEFEAESEKIIHH 174


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 198 ATLQHGIVNSTRSAAFVVKPILMVIEDRMIKYIMSFLKTMKFSGTFCSV 52
           A   H  VNS     +    +LM +   +  +++S  KT+K  G F  +
Sbjct: 206 AQTMHSSVNSVGDGTYAGFIVLMAVGSALALFMVSPEKTVKEDGKFVHI 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,696
Number of Sequences: 5004
Number of extensions: 53459
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)