Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0888
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668...    28   4.8  
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567...    28   4.8  
01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638     28   4.8  
03_01_0634 + 4656888-4657112,4657458-4658171                           28   6.3  
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161...    27   8.4  
02_04_0231 + 21117887-21117935,21118710-21118825,21119049-211191...    27   8.4  

>03_06_0253 -
           32666152-32666360,32666443-32666632,32666764-32666862,
           32666999-32667094,32667408-32668361,32668683-32668901,
           32669282-32669491,32669617-32669879,32670041-32671717,
           32672702-32672852
          Length = 1355

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 196 GCDIQVDMMSTYDILASETGRFGFSMSICTIFGSLQE-KVTNYER*RHNLKDFH 354
           GC   V ++S YD +A E   F  S S  T+ GSL    VT  E   ++   FH
Sbjct: 52  GCGACVVVVSKYDAVADEVTEFSAS-SCLTLLGSLHHCAVTTSEGIGNSRDGFH 104


>03_06_0252 -
           32656068-32656276,32656361-32656550,32656682-32656780,
           32656917-32657012,32657200-32658153,32658476-32658694,
           32658911-32659120,32659241-32659503,32659605-32661281,
           32663639-32663792
          Length = 1356

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 196 GCDIQVDMMSTYDILASETGRFGFSMSICTIFGSLQE-KVTNYER*RHNLKDFH 354
           GC   V ++S YD +A E   F  S S  T+ GSL    VT  E   ++   FH
Sbjct: 53  GCGACVVVVSKYDAVADEVTEFSAS-SCLTLLGSLHHCAVTTSEGIGNSRDGFH 105


>01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638
          Length = 272

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 180 IVNSTRSAAFVVKPILMVIEDRMIKYIMSFLKTMKFSGTFC 58
           IVN+  ++AF + P  ++  DR+ KY++  L+T    G FC
Sbjct: 89  IVNTNITSAFRI-PAPVIGGDRLKKYVLHKLRTELPEGPFC 128


>03_01_0634 + 4656888-4657112,4657458-4658171
          Length = 312

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -1

Query: 484 YLLQQIG*RL-LSDPVFVVVFELISFNKSHSKLMNTIDTPDITQHENLSNYDVIVHNL*L 308
           +L  QI   L L DP+F+           +S+++N +   D  Q+    +   I+  +  
Sbjct: 188 FLAMQIARHLQLQDPIFL---------SDNSEIVNAVQNEDYIQNPGHWSLRPIISRIKN 238

Query: 307 FLEGSRILYIWTSRTRN 257
           FL+  ++  IW SR  N
Sbjct: 239 FLQDQQVRIIWISRELN 255


>04_03_1049 +
           22015053-22015083,22015770-22015885,22016013-22016108,
           22016229-22016285,22016468-22016620,22016754-22016838,
           22017097-22017187,22017324-22017488,22017813-22017932,
           22018020-22018104,22018234-22018402,22019055-22019173,
           22019250-22019440,22019746-22019957,22020905-22021500,
           22022538-22022658,22023439-22023868,22024412-22024797,
           22024976-22025071,22025380-22025432,22026915-22027061,
           22027139-22027309,22027880-22027962,22028049-22028247,
           22028668-22028789,22029752-22029818,22029960-22030010,
           22030768-22031001,22031263-22031451,22032455-22032646,
           22032742-22032936
          Length = 1673

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 237 NIVSGHHIHLDITATLQHGIVNSTRSAAF 151
           +++S H +HL + AT  H I   T  + F
Sbjct: 233 SVISSHSMHLGVLATASHAISTGTLFSVF 261


>02_04_0231 +
           21117887-21117935,21118710-21118825,21119049-21119144,
           21119276-21119332,21119547-21119699,21119801-21119885,
           21120022-21120139,21120278-21120442,21120795-21120914,
           21121006-21121081,21121247-21121418,21121574-21122049,
           21122130-21122320,21124348-21124583,21125799-21125959
          Length = 756

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 237 NIVSGHHIHLDITATLQHGIVNSTRSAAF 151
           +++S H +HL + AT  H I   T  + F
Sbjct: 248 SVISSHSMHLGVLATASHAISTGTLFSVF 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,627,806
Number of Sequences: 37544
Number of extensions: 299721
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)