Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0888
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                28   4.9  
SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)                  28   4.9  
SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_9788| Best HMM Match : Seryl_tRNA_N (HMM E-Value=4.9)               27   8.6  

>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1227

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 400 VIY*MKLTQIQRQKLGHLTAFNLSVEVDTSVYYY*LQNLKKRYKQFTDNTL 552
           V+Y   L++    ++   T   + VE D +  YY ++NL+  Y+   DN L
Sbjct: 314 VLYPRALSEALLFEITLATVDQVVVESDATKLYYGIKNLELEYESLRDNNL 364


>SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)
          Length = 460

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 113 ILSSITINIGFTTKAAERVELTIPCCKVAVISKWI 217
           ++SS+TIN  F T  A  +   I   K  +  KWI
Sbjct: 105 VISSVTINASFLTLLALAIAQLISLYKPQIYEKWI 139


>SB_29605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 277 WTSRTRNAPFPRPKYRKWTS 218
           WT RTR   + R K+RKWTS
Sbjct: 6   WTRRTRRR-WTRRKWRKWTS 24


>SB_9788| Best HMM Match : Seryl_tRNA_N (HMM E-Value=4.9)
          Length = 149

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 59  QNVPENFIVFKKLIMYFIILSSITINIGFTTKAAERVELTIPCCK 193
           Q VP+   V K +I + +  +   IN+G TT A     + IPC K
Sbjct: 4   QRVPKEVFVSKYIIEFGMYDAIAHINMGATTVAKVYKAVDIPCGK 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,075,124
Number of Sequences: 59808
Number of extensions: 379064
Number of successful extensions: 899
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)