Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0888
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18460.1 68414.m02303 lipase family protein similar to triacy...    31   0.43 
At3g17320.1 68416.m02214 F-box family protein contains F-box dom...    28   5.3  
At4g19160.3 68417.m02827 expressed protein                             27   7.0  
At4g19160.2 68417.m02826 expressed protein                             27   7.0  
At4g12070.1 68417.m01919 expressed protein                             27   7.0  
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    27   7.0  
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    27   9.3  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    27   9.3  

>At1g18460.1 68414.m02303 lipase family protein similar to
           triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Canis familiaris} [SP|P80035]
          Length = 701

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = -1

Query: 355 HENLSNYDVIVHNL*LFLEGSRILYIWTS------RTRNAPFPRPKYRKWTSYPLGYHSH 194
           H  +S+++  +H L +  + S + Y           T  +P  +   R W S P  Y SH
Sbjct: 71  HNGVSSFNHFIHELSVDSDTSSLDYSSGDDDSDGMSTPPSPLSQSSLRSWASLPANYESH 130

Query: 193 FTTW 182
           +T W
Sbjct: 131 WTDW 134


>At3g17320.1 68416.m02214 F-box family protein contains F-box domain
           Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
           interaction domain
          Length = 409

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 247 PRPKYRKWTSYPLGYHS 197
           PR  YR+W  Y LGY S
Sbjct: 145 PRTSYREWDIYALGYES 161


>At4g19160.3 68417.m02827 expressed protein
          Length = 454

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 277 WTSRTRNAPFPRPKYRKWTSYPLGYHSH 194
           WT   +  PFPR K    ++YPL    H
Sbjct: 52  WTGIEKKIPFPRKKTASASAYPLFRSQH 79


>At4g19160.2 68417.m02826 expressed protein
          Length = 453

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 277 WTSRTRNAPFPRPKYRKWTSYPLGYHSH 194
           WT   +  PFPR K    ++YPL    H
Sbjct: 52  WTGIEKKIPFPRKKTASASAYPLFRSQH 79


>At4g12070.1 68417.m01919 expressed protein
          Length = 483

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 351 SCWVMSGVSMVFINLECD-LLNEINSNTTTKTGSLNSL 461
           SC   +GV +VF+N++ + LL +I+  T + T +  SL
Sbjct: 215 SCSQANGVPIVFMNIQTESLLTKISGETASATVNTTSL 252


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -2

Query: 318 ICNFFLKAP----EYCTYGHREPETPRFRGQNI 232
           IC+FF++      + C Y H  PET     QNI
Sbjct: 162 ICSFFIRGECTRGDECPYRHEMPETGELSQQNI 194


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 193 SGCDIQVDMMSTYDILASETGRFGFSMSICTIFGSLQE 306
           S  ++  D+M    +LA  TG   FS S+C +F S  E
Sbjct: 707 SYAELLQDLMEKTLVLALATGNKKFSASLCKLFESYAE 744


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 193 SGCDIQVDMMSTYDILASETGRFGFSMSICTIFGSLQE 306
           S  ++  D+M    +LA  TG   FS S+C +F S  E
Sbjct: 709 SYAELLQDLMEKTLVLALATGNKKFSASLCKLFESYAE 746


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,108
Number of Sequences: 28952
Number of extensions: 262810
Number of successful extensions: 573
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)