Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0887
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    28   1.7  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   2.2  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.8  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   8.8  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 441 RFGTSPLRHAKAVCDYKAV--NTLSIDTNKLKIIANNSLSSEP-NLKKKI-RKAPVNL*P 608
           R G  PL  A+A C +  +  N LS  +   K I  + +  +   L  K+ +KAPV+L P
Sbjct: 47  RMGLGPLTGAEA-CSWNGLYDNCLSKASKLRKTILESEMERQNYQLAAKLSKKAPVDLHP 105

Query: 609 LKP 617
           L+P
Sbjct: 106 LRP 108


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 528 KIIANNSLSSEPNLKKKIRKAPVNL*PLKPFIIKVHVG-RMLLKTFQ 665
           KII   SL+ + +L  KI++      P KPF++       MLLK FQ
Sbjct: 592 KIIFPFSLNPDADLNLKIKRLKDPDAPSKPFVVNATTEMEMLLKCFQ 638


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 557 GAKFEKKNQESPC*PIAPKTFYNKSSCWTNVTKNVSIDFKSNTR*YSIVNT 709
           G    KKN+ +    IA  TFY        VT  +++DF    R Y+ V T
Sbjct: 105 GCCLTKKNENTFDRRIAGVTFYRSQMMLVTVTCILAVDFTLFPRRYAKVET 155


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 604 YRLTGAFLIFFFKFGSELSELLAMIFNLLVSI 509
           Y +TG FL+ +F  GS    +LA I NL + I
Sbjct: 408 YFITGKFLLSWFNLGSH-GLILANILNLSLRI 438


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 456 PLRHAKAVCDYKAVNTLSIDTNKLKIIANNSLSSEPNL 569
           PL   K    YK+ NTL + T   +  + + LSS+ N+
Sbjct: 30  PLTWLKNNVAYKSTNTLLLPTPNAEYYSTSKLSSQVNV 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,702
Number of Sequences: 5004
Number of extensions: 50965
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)