Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0887
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0718 - 6365506-6366047,6381623-6381937,6382857-6383082,638...    28   9.2  

>08_01_0718 -
           6365506-6366047,6381623-6381937,6382857-6383082,
           6383295-6383458,6383498-6383934,6384395-6384669
          Length = 652

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 441 RFGTSPLRHAKAVCDYKAVNTLSIDTNKLKIIANNSLSSEPNLK 572
           R GTSP+R +K     KA+  L+ D    K++AN+ +    N+K
Sbjct: 144 RGGTSPVRISK-----KAITKLTTDALNKKMVANDKILENINVK 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,906
Number of Sequences: 37544
Number of extensions: 241805
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)